Hi, Thanks for the feedback. The DNA sequence in the fastq file was all on one line. The formatting was just invented by Outlook, sorry for the confusion.
But I had a go with Bastian's comment and tried mpiexec -n 72 /global/software/ray/ray230/Ray -k 31 -i HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq -o test5 With #PBS -l nodes=12:ppn=6 And it seems to have worked. So changing the cores solved the problem. Thanks, Ruth On 14-01-30 8:04 AM, "Sébastien Boisvert" <sebastien.boisver...@ulaval.ca> wrote: > >On 29 janvier 2014 17:51, Miller, Ruth [ruth.mil...@bccdc.ca] wrote: >> À : Sébastien Boisvert; denovoassembler-users@lists.sourceforge.net >> Objet : Re: RE : Segmentation fault with -k 31 >> >> Hi, >> I have copied in the top 100 lines of my input file below. >> However, I do think the problem is something to do with -k 31, as the >> following command: >> >> "mpiexec -n 80 /global/software/ray/ray230/Ray -i >> HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq -o test4" >> >> just finished successfully on the same file. >> >> >> Thanks, >> >> Ruth >> >> >> ---- >> >> @HWI-ST521:180:D2B4AACXX:4:1101:1236:1171 1:N:0:CCGTCC:B >> >>CCTCCTCTCCTGGGTCCCCAGGAGAGGAGGCTACATGCACAGACAGGACCCCTCTCTGCCCTTAAGCCATGCT >>CT >> GGTGGGTGACAGACTCAGAAAG > >There should not be a new line here. DNA sequences must be on 1 line in >the fastq format I believe. > >> + >> >>?@@DDD?AAFDHHD@FHIIIEIHG;;@EDD)?D@B@FBGGIGIGI@D=8BFHHE>C@@@CCAEDC@CDD>@@E >>EA >> CA@C??;=<:@CC?>ACCC:@C >> @HWI-ST521:180:D2B4AACXX:4:1101:1236:1171 2:N:0:CCGTCC:B >> >>GCTGGTGTGATGGATGGGAGTGGGACATGTTATAGACTCCTGTTTCTTGTGGTCCTACTGTGTGCTGGTACCC >>TC >> ATCTGGGGACATGTAGTGAGTGG >> + >> >>@@CFFADAFDHHHFIIIJ>FEBFHGGG>FFICH@>?BGHI@GBGIJJIHBEDFGGCEGIGDGFCF@:CDCHAC >>HH >> E>CBEF9BCC?@@5>A(:@>:>? >> @HWI-ST521:180:D2B4AACXX:4:1101:1200:1175 1:N:0:CCGTCC:B >> >>GAATATACTTAACACTACTGAGCTGTGCACTTTAAAAATGGTTCAGATGGTAAATTTTGTGGTGCCTGATTAT >>TA >> TTATTTTTTTTAG >> + >> >>?<<DFFDDFFHD<@EDHBGG>G9FB?C?@A4FCBBFEGII9?CGHI<GHI:?BFE<@FH?FHHG4==C@DGFG >>EH >> DAEH4=?>BA?AC >> @HWI-ST521:180:D2B4AACXX:4:1101:1200:1175 2:N:0:CCGTCC: >> >>GCTGGGAGCTGTAGTGTAGTTCGCAGACACAGCGTGGATCTGGTGTTGCTGTGGCTGTGGTGTAGGCCAGCAA >>CT >> GTAGCTCTGATTTGACCCCTAGCCT >> + >> >>B;BDDDDDHFHACGGHGCFHHGF<FGBHGCBF=@FHH?<9?@FBF.6=C@FHEGGA@==ACCD@@B).6;??C >>BC >> CCDC:5::CC@@CCA5,2(<@C393 >> @HWI-ST521:180:D2B4AACXX:4:1101:1146:1210 1:N:0:CCGTCC: >> >>GCGTCTGATGCCGACGCTCATCAGACCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATGG >>AA >> GTCGGAATCCGCTAAGGAGTGTGTA >> + >> >>B@@FFDFFHHHHHGIGII:FHGIHHCDHHIIGGGIGG=B<FGH;FHEHGIHFEHEHDDFFCDDD3<@B2>::C >>CC >> CCCDDBBD::9@BDDC?CA?<>>?C >> @HWI-ST521:180:D2B4AACXX:4:1101:1146:1210 2:N:0:CCGTCC: >> >>GTCCCTCTCGCGCGCTGCTCCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCTCCAGCGCCATCCATTTT >>CA >> GGGCTAGTTGATTCGGCAGGTGAGT >> + >> >>B@=DDEDFHHHHAGGIIJBHHIIJJ8)BGG8AD?CBBDDD-)0>88<?BB7@D<BD8BCDCBDDBD?BCC:>C >>DC >> A@<@BDD::@CCC@?A9@>@1>>8> >> @HWI-ST521:180:D2B4AACXX:4:1101:1099:1216 1:N:0:CCGTCC:B >> >>ACTTTCAATAGATCGCAGCGAGGGAGCTGCTCTGCTACGTACGAAACCCCGACCCAGAAGCAGGTCGTCTACG >>AA >> TGGTTTAGCATCAGGTT >> + >> >>@@@DDDFFGAFHFDGHBE@@@FBE6:)?DBFFDBBH<8D?=CGGGEBAGEHFFB85?A>?CCCC9:;88ABCB >>;8 >> <>CCCBCA(((+:@CCC >> @HWI-ST521:180:D2B4AACXX:4:1101:1099:1216 2:N:0:CCGTCC:B >> >>CGTCCCTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAACCGCGGTCCTATTCCATTATTCCTAG >>CT >> GC >> + >> >>1==D+@AD?DFHD<?ABBFCE>FHACAFE<F@GBD3??;BDHICFGD<CB/@<5AB7BCBB366>@3@CD@@C >>CA >> CD >> @HWI-ST521:180:D2B4AACXX:4:1101:1491:1111 1:N:0:CCGTCC: >> >>CCGCACTTGTGACATATGGAAGTTCCCAGGCTAGGGGTTCAATCAGAGCTGCAGCTGCCGGCCTACCTCACAG >>CC >> ACAGAAATTCCAGATCTGAGCCACA >> + >> >>?@@DDFFFHHHFFEHCHHIHEIGHEHGGHIIIGHJIJ@F?9BBGDH@HEFHBFFGGIHCHGHFFBEEECCCAC >>A= >> ?CADCDDDD@ADCCDCDDDDD?CCD >> @HWI-ST521:180:D2B4AACXX:4:1101:1491:1111 2:N:0:CCGTCC: >> >>GGCTCAGCAGAAACAAATCTGACAAGTATCCATGAGGACAAAGGTTCGATCCCTGGCCTTGCTCAGTGGGTTT >>AG >> GACTCGGCATGGCTGTGAGCTGTGG >> + >> >>CCCFFFFFHHHHGJGIIJIJJCGGIJHCEHFGHIIIIEHCDEFGGIBGHGFGHHIICGHIIJIEGH@DCH:AB >>DB >> BDD>CB?=@>9ABCB?C@CDCDCCC >> @HWI-ST521:180:D2B4AACXX:4:1101:1446:1133 1:N:0:CCGTCC: >> >>TGTGGGGCGGGCCCGGCCGGGGGTATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGG >>AC >> CAGAGCGAAAGCATTTGCCAAGAAT >> + >> >>CCBFFFFFHHHHHHHE<ABDDDD67CC8<?CDDD@@0::9BBBACDCDCCCDDCDEDD>>CDB7B;BBBCCDD >>>@ >> @ABBB399>>BCCCDDEACDCDDDC >> @HWI-ST521:180:D2B4AACXX:4:1101:1446:1133 2:N:0:CCGTCC: >> >>CATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAA >>AA >> CATTCTTGGCAAATGCTTTCGCTCT >> + >> >>C@CFFFFFGHHHFHIIIJIIGHIIJJIGGJIIJIJHHHIJJIIGJHIHHHEFFDDECBBDBDDDDDCDDEDDC >>DC >> DDDDDEEDDCCDDDDCDDAC?BBBB >> @HWI-ST521:180:D2B4AACXX:4:1101:1269:1134 1:N:0:CCGTCC: >> >>AGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAAT >>GA >> AAACATTCTTGGCAAATGCTTTCGC >> + >> >><@B=DDADFHHHHJJFECGCEGGE?EFHGIFHADDG@A=BB=FGCEEHGEHFFBA6>?CCBADBBCDACDDCD >>DC >> CAAABCC:@@>CA>>AC@>CDDCD< >> @HWI-ST521:180:D2B4AACXX:4:1101:1269:1134 2:N:0:CCGTCC: >> >>CGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA >>CC >> GGCGCAAGACGGACCAGAGCGAAAG >> + >> >>?@<DDDDEDGH;<CGHFHIGGIJIJIF;FH:DFGHGD;@?C(>?CDCDC?=B<8BBBCDBABCDCDA>CCCCC >>>A >> @B@BB9&5?A><59@?BBB(5509@ >> @HWI-ST521:180:D2B4AACXX:4:1101:1410:1138 1:N:0:CCGTCC: >> >>CCTAGTGCAATGGTGATGGATAGTGCTTGGATTATGTGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGC >>CG >> GGGGCATTCGTATTGCGCCGCTAGA >> + >> >>@@@DADDDFFFHDCFBHHI@HCDAAFFHBEAFHDFGCDFEFHIGGCBE<GHGICDACGGHIGIEGHIDIHEBB >>B@ >> 8;@BBBCCCDCCCCCC<3<<B<99: >> @HWI-ST521:180:D2B4AACXX:4:1101:1410:1138 2:N:0:CCGTCC:B >> >>GTCGGTATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTATTCGAACCTCCGACTTTCGTTCTTGATTA >>AT >> GAAAACATTCTTGGCAAATG >> + >> >>==+AD@DB:CFHHGHIIEH?FEHHIE?DE<FG?@;CGBFGFAF2=CDHGCEHB;?BB9>=ACD?C<@CCCCCC >>AC >> ((4>C3?ACCDD:>CAA<AC >> @HWI-ST521:180:D2B4AACXX:4:1101:1296:1143 1:N:0:CCGTCC:B >> >>TCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAA >>TG >> AAAACATTCTTGGCAAATGCT >> + >> >>@@@D:8ADACFDDGIIBGGBGF:E>C8CGFF7B;8=BFEFBFIIICAECFB@D;9=8?@3@B?A?BBB(>>@> >>A@ >> :>:4(24:>:@3:3>@1>AAB >> @HWI-ST521:180:D2B4AACXX:4:1101:1296:1143 2:N:0:CCGTCC: >> >>GACCAGAGAGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCA >>GA >> TACCGTCGTAGTTCCGACCATAAAC >> + >> >>:11A?DAD+ABHHB+AAGB94ECFGFEGH:CEH9EHGIG<:99BF>:@@CGGDGHH@FB5;=ABDF<CAA?2; >>AC >>>@@C=@=@)+22(+4<-)9@>@C<> >> @HWI-ST521:180:D2B4AACXX:4:1101:1442:1171 1:N:0:CCGTCC: >> >>TGGGAGAGCGGTCGTGGAGAGAGGAGCCCTCCAGGGAAGCTGGAAGTTCTTGGGAGGTGGAGGAGATGGACAG >>AG >> GTTCCGAATCGCCCCAGCTTGGGAG >> + >> >>@@@FDFDFHDHFHGDFHEF:D8BGEDDGGHGIFCBF<@CCCHGGCGEEHEEEFF(?A;A@BBB8?9CCCCCCC >>CC >> BCBC:99@BBBC>BBB@?>C???B? >> @HWI-ST521:180:D2B4AACXX:4:1101:1442:1171 2:N:0:CCGTCC: >> >>TGCCCTGAGCTGTGCTGTAGGTTGCAGATGCGGCTCAGATCAGGGCAACATCAGATCTTTAACCCACTGAGTG >>AA >> GTGGGTTGGACCTGCATCCTCATGG >> + >> >>;?@FDDEDAFHHFHGIIEHHI?HHGIHJ<AFBE)BBBFG<FHIFI=?FFHHIGAGGCAEEDA77AH?@D@D?@ >>CE >> C@AC;B;/25,5(5<?C4>@>@@CC >> @HWI-ST521:180:D2B4AACXX:4:1101:1358:1215 1:N:0:CCGTCC: >> >>TGGTTGGAAAGAAATGGGCTACATTTTCTACATAAGAATAACCACCATACGAAAGTTTTTATGAAACTAAAAA >>CC >> AAAGGAGGATTTAGCAGTAAATCAA >> + >> >>@@@AB=DDDBDDA9FGBF:FE+CCHHF>?EFFF?GFFEFG*0BDF=BB<BFD?@F8BFGIIIIID:@DFFCAE >>BD >> ;?=@@ACBBBABBB>ABABB@B@BA >> @HWI-ST521:180:D2B4AACXX:4:1101:1358:1215 2:N:0:CCGTCC: >> >>ATGGCCTTATTCAATCAAGCACTCTATTCTTGATTTACTGCTAAATCCTCCTTTGGTTTTTAGTTTCATAAAA >>AC >> TTTCGTATGGTGGGTATTCTTATGT >> + >> >>?@@DDDDFBDF:C@G@FGB>CFGHJEIIHHIIGHIIICEE@G>DFI??FEFFHIGI8BDHGGGHGIJIJGHGG >>IJ >> B7@EHAE@@D;?AD;@:ACDDCCCC >> @HWI-ST521:180:D2B4AACXX:4:1101:1728:1103 1:N:0:CCGTCC: >> >>GGCTTGAAAGTGTTAGCTTCCCTATCCCAAGTACTGGTTTTAAAATCACTTAAAACCTTGTTAGAAAAATCTC >>CC >> CAAGCCATCAATTGAGAAAGCGTTA >> + >> >>BCCFFFFFHHHHHIHIJIJHIIIIJHIIIIGHJJIJICGGIJJJ@DFGJHJJJJIIJGIGHIIIFHIJJDHHH >>HG >> A>ABDFDEEEEEDECA?A?@C@?BD >> @HWI-ST521:180:D2B4AACXX:4:1101:1728:1103 2:N:0:CCGTCC: >> >>GTCCGGTATTGGGCTAGGAGTTTGTTATTAGTTTTTGGGATTATGTTGGTGAATTTGTTGAGCTTTAACGCTT >>TC >> TCAATTGATGGCTTGGGGAGATTTT >> + >> >>BCBFFFDDHHHHFJ@FFHAFGIJJHIGIJGICGIJJIHIGGIIHGFIIJH;CHHIHGFHHIJJIJHHFFEDFF >>DD >> EEDCDDDDEDCDDBBB@BB@9ACDC >> @HWI-ST521:180:D2B4AACXX:4:1101:1720:1143 1:N:0:CCGTCC: >> >>TTGGGGTATTTTTAAGGTTGAACTAAAATTCTTTCTCGGACAACCAGCTATCACCAGGCTCGTTAGGCTTTTC >>AC >> CTCTACCTACAAGTCTTCTCACTAT >> + >> >>@@@FFF=DFHHHFIJIJIECEHGEAHIG@@?FFHIIGHDGGGGGGIG=GIJGH8@FGGD>CB=BD?CC>ACEC >>CC >> ACAA@@>CDCCCC@55>ACCD@CDC >> >> >> >> >> On 14-01-29 7:05 AM, "Sébastien Boisvert" >><sebastien.boisver...@ulaval.ca> >> wrote: >> >>> >>>On 27 janvier 2014 19:41, Miller, Ruth [ruth.mil...@bccdc.ca] wrote: >>>> À : denovoassembler-users@lists.sourceforge.net >>>> Objet : [Denovoassembler-users] Segmentation fault with -k 31 >>>> >>>> Hi, >>>> >>>> I am getting a segmentation fault when I try to analyse my data with >>>>k31. >>>> >>>> The command is: >>>> mpiexec -n 80 /global/software/ray/ray230/Ray -k 31 -i >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq o test4 >>>> >>>> >>>> The error is: >>>> mpiexec noticed that process rank 17 with PID 30162 on node cn085 >>>>exited on signal 11 (Segmentation fault). >>>> >>>> The tail of the log file I get up until then is copied in below (I >>>>would have copied it all in, but it made the email too large to send to >>>>the mail list). >>>> >>>> I wonder if it might be the same error Matthew Macmanes is seeing in >>>>his post "_pmiu_daemon(SIGCHLD) segfault using Ray version >>>>2.3.1-devel<http://sourceforge.net/mailarchive/message.php?msg_id=31720 >>>>10 >>>>8>" ? However, it doesn't seem to happen without the k 31 option. >>>> >>> >>>According to your log, your run failed during the loading of data >>>whereas >>>Matthew's issue was taking place later. >>> >>> >>>Maybe there is some problem with your input file. Can you provide the >>>first lines. >>> >>>> Thanks, >>>> >>>> Ruth >>>> >>>> >>>> Rank 41 is loading sequence reads >>>> Rank 41 : partition is [82553049;84566537], 2013489 sequence reads >>>> Rank 59 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 40 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 15 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 69 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 39 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 24 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 74 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 14 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 32 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 31 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 79 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 57 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 46 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 13 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 33 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 29 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 72 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 60 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 42 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 12 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 34 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 28 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 73 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 58 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 45 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 9 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 38 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 25 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 76 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 56 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 41 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 11 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 77 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 61 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 10 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 75 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 63 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 62 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 78 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 67 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 71 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 64 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 70 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 68 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 70 has 0 sequence reads (completed) >>>> Rank 68 has 0 sequence reads (completed) >>>> Rank 67 has 0 sequence reads (completed) >>>> Rank 71 has 0 sequence reads (completed) >>>> Rank 64 has 0 sequence reads (completed) >>>> Rank 50 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 55 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 53 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 49 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 49 has 0 sequence reads (completed) >>>> Rank 53 has 0 sequence reads (completed) >>>> Rank 50 has 0 sequence reads (completed) >>>> Rank 55 has 0 sequence reads (completed) >>>> Rank 43 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 44 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 47 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 51 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 54 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 48 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 52 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 51 has 0 sequence reads (completed) >>>> Rank 54 has 0 sequence reads (completed) >>>> Rank 48 has 0 sequence reads (completed) >>>> Rank 52 has 0 sequence reads (completed) >>>> Rank 43 has 0 sequence reads (completed) >>>> Rank 44 has 0 sequence reads (completed) >>>> Rank 47 has 0 sequence reads (completed) >>>> Rank 16 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 16 has 0 sequence reads (completed) >>>> Rank 23 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 23 has 0 sequence reads (completed) >>>> Rank 21 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 21 has 0 sequence reads (completed) >>>> Rank 22 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 22 has 0 sequence reads (completed) >>>> Rank 19 is fetching file >>>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>>loading (please wait...) >>>> Rank 19 has 0 sequence reads (completed) >>>> Rank 0 has 0 sequence reads >>>> Rank 0: assembler memory usage: 192592 KiB >>>> Rank 0 has 100000 sequence reads >>>> Rank 0: assembler memory usage: 192592 KiB >>>> Rank 0 has 200000 sequence reads >>>> Rank 0: assembler memory usage: 192592 KiB >>>> Rank 0 has 300000 sequence reads >>>> Rank 0: assembler memory usage: 208980 KiB >>>> Rank 0 has 400000 sequence reads >>>> Rank 0: assembler memory usage: 208980 KiB >>>> Rank 17 has 0 sequence reads >>>> Rank 17: assembler memory usage: 163460 KiB >>>> >> ------------------------------------------------------------------------------ WatchGuard Dimension instantly turns raw network data into actionable security intelligence. It gives you real-time visual feedback on key security issues and trends. Skip the complicated setup - simply import a virtual appliance and go from zero to informed in seconds. http://pubads.g.doubleclick.net/gampad/clk?id=123612991&iu=/4140/ostg.clktrk _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
