Hi,
Ray 2.3.1 is now available on
http://denovoassembler.sourceforge.net/download.html.
This version includes a contribution from Rob Egan (DOE Joint Genome
Institute). Thanks Rob !
Significant changes:
* This version includes "Surveyor" to compute similarity (or distance) matrices
for hundreds or possibli thousands of samples.
* fix compilation error on Apple OS X Mavericks
* fix infinite loop when running on 2 CPU cores
* fix a bug when the number of ranks is a prime number
All changes in Ray:
Rob Egan (1):
fix compilation on NERSC's edison machine using PrgEnv-intel
Sébastien Boisvert (30):
SequencesLoader: fix bad automatic pairing of sequence files
SequencesLoader: fix compilation warnings
Surveyor: verify buffer size before getting producer
Surveyor: add a variable to store the period
Surveyor: run in actor-model-only mode
spawn actors with spawn instead of spawnActor
Documentation: add some documentation for Surveyor
SeedExtender: add some assertions
Searcher: disable verbose outputs
Surveyor: skip invalid files
coloring: added comments for coloring subsystem
update release procedure
next release will be 2.3.1
fix infinite loop when running on 2 CPU cores
fix a bug when the number of ranks is a prime number
print number of payloads
add some code to test directed surveys with Surveyor
fix reproducibility issue for similarity and distance matrices
Surveyor: support nucleotides in lower case
report invalid edges as warnings instead of errors
documentation: add license in README
Surveyor: report 0 hits when necessary
SeedingData: provide prototypes for friend functions
Surveyor: fix compilation issue without debug code
seeds: add a parameter -minimum-seed-length (default 100)
add option -graph-only to stop after graph building
fix compilation error on Apple OS X Mavericks
use CONFIG_ASSERT instead of ASSERT for optional code
version 2.3.1
update releases
Changes in RayPlatform:
Rob Egan (1):
fix compilation on NERSC's edison machine using PrgEnv-intel
Sébastien Boisvert (15):
communication: relay buffer bytes instead of buffer 64-bit integers
core: add a actor-model-only mode
actors: add playground status with -debug
core: add buffer statistics with -debug
actor model: change the method name from spawnActor to spawn
fix the code for testing message integrity
fix a regression introduced in a01f97eae41bcd759bfc521d84053552cf38d521
files: add method to check if a file is valid
add mini-rank information in the message metadata
fix mini-rank runtime engine
print registered message tags in debug mode
documentation: add LGPLv3 info in README
communication: some routes don't require routing
use CONFIG_ASSERT instead of ASSERT for optional code
fix compilation warning
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