Hello,

Before I try a few things myself I thought I might ask if there is a
way to collect either final assembled contigs that were not assigned
any taxonomy (under BiologicalAbundances)?

I think I could collect the contig IDs of everything that was
assigned, but since they occur at many different levels (species to
kingdom) this seems messy and error prone. Do unassigned contigs
already show up somewhere else?

On a related note, is there a way to find individual reads that were
not included in any contigs?

Thanks,
Jim

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