Hello,
I am working with a tetraploid dataset, and most assemblies generate
redundancy (small contigs representing different haplotypes of a small
region belonging to a different contig).
This provides me with an assembly that is neither haploid nor diploid nor
tetraploid. Is there any way to remove these redundant contigs or assemble
in such a way as to not create them? My homozygous nucleotide coverage is
about 120x, and the dataset is HiSeq 100x2 bp.
Thank you,
Adrian
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