________________________________
> From: a...@dna.bio.keio.ac.jp
> To: sebastien.boisver...@ulaval.ca
> Date: Fri, 30 May 2014 21:18:05 -0400
> Subject: Ask about Ray Meta
>
> Dear Sébastien Boisvert,
>
> I would like to use Ray Meta in my research.
> In your paper, you have conducted experiments for 124 human gut
> microbiomes. I have tried to run Ray Meta for the MH0047
> dataset(ERS006592), but I got little bit different results with the
> results written in your paper.
>
> For the MH0047 dataset (ERS006592), scaffolds> 500
> in your paper :
> N50 = 10,277
> Number of scaffolds = 9,387
> Total length = 24,687,275
>
> in my experiment
> N50 = 9,946
> Number of scaffolds = 9,544
> Total length = 24,850,660
If you run on 1 rank, the result is deterministic, otherwise, it is not.
>
> I run the Ray Meta with this commands :
>
> mpiexec -n 32 ray-build/Ray -k 31 -i ERR011192mix.fastq -i
> ERR011193mix.fastq -o MH47Results
>
> I would like to make sure, whether my commands are true or not. I am
> looking forward to hearing from you soon. Thank you very much.
>
When you downloaded the data from your data source, I suppose
there were 4 files (11192_1, 11192_2, 11193_1, 11193_2).
Is that correct ?
> Best regards,
> Afiahayati
> Dept. of Biosciences and Informatics
> Keio University
> Japan
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