> ________________________________________
> From: Cyril Frantzen [cyril.frant...@nmbu.no]
> Sent: Friday, July 04, 2014 7:32 AM
> To: Boisvert, Sebastien
> Subject: Some questions about your Ray assembler
> Hello,
> We've recently begun experimenting with your Ray assembler and we find our
> assembly results are very good when looking at the output .fasta file,
> however we are struggling a bit with post-assembly coverage binning of the
> data because the coverage-per-region is not included in the data (as included
> in .ace file of Newbler and in contig names of SPAdes). This provides a
> problem for us when looking for mobile regions and/or plasmids.
> Can you shed some light on this?
Ray does generate coverage depth data.
RayMicrobiomeAnalysis/
BiologicalAbundances/
_DenovoAssembly/
Contigs.tsv
*.CoverageData.xml
see
https://github.com/sebhtml/ray/blob/master/Documentation/BiologicalAbundances.txt
> Also, genome-average coverage, where can I find this information? :)
> Thank you for your time.
>
You are welcome !
> Best Regards,
> Cyril Frantzen
> Ph.D.c
> Norwegian University of Life Sciences
> Department of Chemistry, Biotechnology and Food Science
> Laboratory of Microbial Gene Technology
> PO 5003, 1432 Aas, Norway
> Phone: (+47)97650815
> E-mail cyril.frant...@nmbu.no
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