> From: Deborah Triant [dtri...@virginia.edu] > Sent: Wednesday, November 05, 2014 5:20 PM > To: denovoassembler-users@lists.sourceforge.net > Subject: [Denovoassembler-users] assembly error during taxon loading > > > Hi, > > I've been trying to use Ray to assemble a diploid plant genome with Illumina > paired-end data. I am using it on a cluster with 1TB of RAM but it keeps > failing at the same step, "Loading taxons" right after "Counting sequence > biological abundance" > exiting with a general Segmentation fault error. The previous steps seem to > complete but the numbers of sequences in the Scaffolds.fasta and > Contigs.fasta are identical. The cluster that I am using doesn't have > 'mpiexec' installed and instead uses 'ibrun'. > Could this be causing the problem?
No, I don't think that using ibrun causes the problem. This is presumably a software bug in Ray. > > Thanks! > Deb > > > > > > ------------------------------------------------------------------------------ Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server from Actuate! Instantly Supercharge Your Business Reports and Dashboards with Interactivity, Sharing, Native Excel Exports, App Integration & more Get technology previously reserved for billion-dollar corporations, FREE http://pubads.g.doubleclick.net/gampad/clk?id=157005751&iu=/4140/ostg.clktrk _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
