The issues appears that you have a ghost SDVO output detected. That was
fixed long ago.

** Changed in: xserver-xorg-video-intel (Ubuntu)
       Status: Confirmed => Fix Released

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https://bugs.launchpad.net/bugs/533312

Title:
  [ubuntu karmic and lucid] unstable screen with intel video

Status in “xserver-xorg-video-intel” package in Ubuntu:
  Fix Released

Bug description:
  Binary package hint: xserver-xorg-video-intel

  The displayed screen on my monitor is typically shifted down by some
  16pixels : e.g. on the desktop the bottom panel disappears by about
  half, and a black area of the same height appears  at the top of the
  screen. This appears to be related to the intel video graphic, as the
  picture is unstable on two computers each using intel graphic and
  running different versions of ubuntu,  while the picture is rockstable
  for days when the same monitor is used on computers with Nvidia card
  or AMD onboard graphic .

  The monitor is an IBM 14" (type 9514-B23) flat screen with native
  resolution of 1024x768.

  One of the problematic computers has the motherboard Intel D945GCLF2
  (w. atom330). It is booted with either Karmic (default install) or
  Lucid (default install) as well as an install with the latest DRM as
  suggested by #13 in Bug #372575 (using
  https://edge.launchpad.net/~apw/+archive/red ).  The other computer is
  a netbook Acer Aspire One 110L, running karmic (default install).

  The picture can be restored by switching the monitor off and on. It
  jumps back to the shifted screen after a time period ranging from 1
  second to several minutes. It tends (but is not always so) to jump
  sooner when a faster refresh rate is selected ( 75Hz  faster than
  70Hz, faster than 60Hz).

  The monitor provides info about the video signal by its OSD; it says:
  @1024x768 and 75Hz
  H-Frequency: 60.18 kHz
  C-Frequency 75.23 Hz
  Sync Polarity H:+  V:+

  The signal is the same before and after the jump. This identical
  signal is reported when the nvidia card is connected, but I never
  observed the jump with the nividia card.

  [lspci]
  00:00.0 Host bridge [0600]: Intel Corporation 82945G/GZ/P/PL Memory 
Controller Hub [8086:2770] (rev 02)
        Subsystem: Intel Corporation Device [8086:464c]
  00:02.0 VGA compatible controller [0300]: Intel Corporation 82945G/GZ 
Integrated Graphics Controller [8086:2772] (rev 02)
        Subsystem: Intel Corporation Device [8086:464c]

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