Hello C de-Avillez,
(I think it has been you helping me this past few days on IRC. If so, thanks!)

Thank you for submitting this bug and reporting a problem with new
emails pop-up in Thunderbird.

You made this bug report in 2011 and there have been several versions of
Ubuntu and Thunderbird since then.

Could you confirm that this is no longer a problem and that we can close the 
ticket? 
Or, if it is still a problem, could you run the following (only once):
apport-collect 785778

and upload the updated logs and and any other logs that are relevant for
this particular issue.

Thank you again for helping make Ubuntu and Thunderbird better.

gf2

** Changed in: thunderbird (Ubuntu)
       Status: New => Incomplete

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https://bugs.launchpad.net/bugs/785778

Title:
  new emails pop-up on hovering on a folder bleeds to all workspaces

Status in thunderbird package in Ubuntu:
  Incomplete

Bug description:
  Binary package hint: thunderbird

  Frankly, I am not sure this is Thunderbird, but I only see this on TB,
  so there. It might as well be cause by other packages in the stack,
  notably GTK/X.

  When I hover on a TB folder with new unread email, a pop-up is shown
  (white on black) listing the "new" emails received. If -- while the
  pop-up is shown -- I jump to another workspace, this pop-up will now
  appear on *ALL* workspaces, on top. Once this happens the only way to
  take it out is to return to the TB workspace, and move the pointer
  somewhere else.

  I do not know if this is specific to Unity or not.

  ProblemType: Bug
  DistroRelease: Ubuntu 11.04
  Package: thunderbird 3.1.10+build1+nobinonly-0ubuntu0.11.04.1
  ProcVersionSignature: Ubuntu 2.6.38-9.43-generic 2.6.38.4
  Uname: Linux 2.6.38-9-generic x86_64
  NonfreeKernelModules: wl nvidia
  Architecture: amd64
  Date: Fri May 20 08:21:50 2011
  InstallationMedia: Ubuntu 11.04 "Natty Narwhal" - Alpha amd64 (20110228)
  ProcEnviron:
   LC_TIME=en_DK.utf8
   LANGUAGE=en_US:en
   PATH=(custom, user)
   LANG=en_US.UTF-8
   SHELL=/bin/bash
  SourcePackage: thunderbird
  UpgradeStatus: No upgrade log present (probably fresh install)

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