I've encountered the same regression in 12.04. From a bit of digging it
seems it's related to the implementation of gnome_rr_output_is_laptop()
in gnome-desktop. g-s-d uses this function to determine whether an
output is an internal or external display; g-s-d only wants to suspend
if there are no external displays in use. The problem is that
gnome_rr_output_is_laptop() doesn't work properly in some cases. One
case is when the NVIDIA binary driver is present; another recently-fixed
case was systems with eDP panels (bug 933710).

There is a patch in bug 949296 that fixes the problem for me (I have the
NVIDIA driver case).

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https://bugs.launchpad.net/bugs/948844

Title:
  Closing laptop lid does not suspend

Status in “gnome-settings-daemon” package in Ubuntu:
  Incomplete

Bug description:
  I can't pinpoint exactly when this started (or rather, stopped)
  happening, but at some time in the last week suspend on lid close
  stopped working for me, in spite of the settings in the Power applet.

  ProblemType: Bug
  DistroRelease: Ubuntu 12.04
  Package: gnome-power-manager 3.3.3-0ubuntu1
  ProcVersionSignature: Ubuntu 3.2.0-18.28-generic 3.2.9
  Uname: Linux 3.2.0-18-generic x86_64
  NonfreeKernelModules: nvidia
  ApportVersion: 1.94-0ubuntu2
  Architecture: amd64
  CheckboxSubmission: dd3689fa6394f60ec14dbe98d0bab891
  CheckboxSystem: b633b4f40868d491c2ae5b50030ce6f3
  Date: Wed Mar  7 10:30:05 2012
  EcryptfsInUse: Yes
  InstallationMedia: Ubuntu 10.04.1 LTS "Lucid Lynx" - Release amd64 
(20100816.1)
  SourcePackage: gnome-power-manager
  UpgradeStatus: Upgraded to precise on 2012-01-13 (53 days ago)

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