Hi Pedro, Can you please try to run your second executable only (ph.x) and see whether it works fine with airavata ?
Lahiru On Tue, Jan 29, 2013 at 3:48 PM, Pedro da Silveira <[email protected]>wrote: > Hi Dev, > > I need a few tips here on how to run my workflow. > > I prepared a simple script to run my workflow, which has 4 inputs and runs > on Lonestar. > In my script, I call two Fortran executable. It first runs "pw.x", later > runs "ph.x" in this order. > Unfortunately, as soon as the "pw.x" finishes, the ph.x does not start to > run. I checked the output and nothing is written there. By looking on Xbaya > dashboard it just says that my job is still running. My wall time is of 24h > because the ph.x will require time to finish. > I am using the user name ogce on Lonestar. > > Is this echo at end of my script correct? > Should I point to the path where my output is located? > Should I create a String Output variable on my AppService to receive this > information back on the Xbaya? > > Script file name: executePhonon.sh > > ================================================= > #ibrun $SCRATCH/pw.x -inp ./Pwscf_Input > ./Pwscf_Output; > echo $* > export APP_PATH=/scratch/01437/ogce/Vlab/Phonon/ > > cd $APP_PATH > cp $1 . > cp $2 . > cp $3 . > cp $4 . > ####ibrun > /scratch/01437/ogce/Vlab/pw.x < Pwscf_Input >> $APP_PATH/Pwscf_Output; > > /scratch/01437/ogce/Vlab/ph.x < Phonon_Input >> $APP_PATH/Phonon_Output ; > > echo Pwscf_Output=$APP_PATH/Pwscf_Output > echo Phonon_Output=$APP_PATH/Phonon_Output > =================================================== > > Any advice on how to have this script running on Lonestart is welcome. > > Thank you, > > Pedro da Silveira > -- System Analyst Programmer PTI Lab Indiana University
