I am going to look into this and will get back to you soon. Thanks Raminder
On Jan 29, 2013, at 4:08 PM, Pedro da Silveira wrote: > Hi Lahiru, > > Yes. I tested the second executable "ph.x". It runs just fine. In fact, I > ran this executable separately and it took around 15 hour to finish. I also > tried small examples that took only 3 minutes. > > Thank you, > > > > On Tue, Jan 29, 2013 at 3:04 PM, Lahiru Gunathilake <[email protected]>wrote: > >> Hi Pedro, >> >> Can you please try to run your second executable only (ph.x) and see >> whether it works fine with airavata ? >> >> Lahiru >> >> On Tue, Jan 29, 2013 at 3:48 PM, Pedro da Silveira <[email protected] >>> wrote: >> >>> Hi Dev, >>> >>> I need a few tips here on how to run my workflow. >>> >>> I prepared a simple script to run my workflow, which has 4 inputs and >> runs >>> on Lonestar. >>> In my script, I call two Fortran executable. It first runs "pw.x", later >>> runs "ph.x" in this order. >>> Unfortunately, as soon as the "pw.x" finishes, the ph.x does not start to >>> run. I checked the output and nothing is written there. By looking on >> Xbaya >>> dashboard it just says that my job is still running. My wall time is of >> 24h >>> because the ph.x will require time to finish. >>> I am using the user name ogce on Lonestar. >>> >>> Is this echo at end of my script correct? >>> Should I point to the path where my output is located? >>> Should I create a String Output variable on my AppService to receive this >>> information back on the Xbaya? >>> >>> Script file name: executePhonon.sh >>> >>> ================================================= >>> #ibrun $SCRATCH/pw.x -inp ./Pwscf_Input > ./Pwscf_Output; >>> echo $* >>> export APP_PATH=/scratch/01437/ogce/Vlab/Phonon/ >>> >>> cd $APP_PATH >>> cp $1 . >>> cp $2 . >>> cp $3 . >>> cp $4 . >>> ####ibrun >>> /scratch/01437/ogce/Vlab/pw.x < Pwscf_Input >> $APP_PATH/Pwscf_Output; >>> >>> /scratch/01437/ogce/Vlab/ph.x < Phonon_Input >> $APP_PATH/Phonon_Output ; >>> >>> echo Pwscf_Output=$APP_PATH/Pwscf_Output >>> echo Phonon_Output=$APP_PATH/Phonon_Output >>> =================================================== >>> >>> Any advice on how to have this script running on Lonestart is welcome. >>> >>> Thank you, >>> >>> Pedro da Silveira >>> >> >> >> >> -- >> System Analyst Programmer >> PTI Lab >> Indiana University >>
