Hi Raminder, Yes. I exceeded my disk quota at $HOME on Lonestar
login1$ du -sh ~/ 1.1G /home1/00091/tg458470/ login1$ I checked the Lonestar User Guide and it says that each user are limited by quota to 1GB on $HOME. I will clean my $HOME and try the test again. Thank you, On Wed, Feb 6, 2013 at 9:23 AM, Raminder Singh <[email protected]>wrote: > Hi Pedro, > > Can you check space in home directory of your account on Lonestar? I have > seen such problem if you cross disk quota. Gram does not give any error > and job does not go into queue. If quota is fine then we need to debug more. > > Thanks > Raminder > > On Feb 5, 2013, at 7:49 PM, Pedro da Silveira wrote: > > > Hi Dev, > > > > I am trying to submit a workflow using my Xsede account using Xbaya. It > has > > worked successfully using "ogce" account. > > I changed the file "airavata-server.properties" to use my Xsede portal > > account. > > > > myproxy.user=pedrorcs > > myproxy.pass=****** > > > > I also changed the Application Service to use a different settings like > my > > user $SCRATCH directory. > > > > Executable path: > > /scratch/00091/tg458470/executePwscf.sh > > > > Scratch Working directory: > > /scratch/00091/tg458470/Phonon > > > > I set the workflow to run then I setup correctly the local path to input > > files on my desktop. > > All input files got transferred correctly, but the job were never not > > submitted to PBS. > > Can someone please clarify if I am doing something wrong? > > > > This is the log on Airavata-Server: > > > > > ================================================================================================================= > > [INFO] Experiment launched > > :SimplePhonon_01a4d374-486f-4948-937f-a9de4b2b45eb > > [INFO] -----DATA----- > > [INFO] Start scheduling > > [INFO] -----END DATA----- > > [INFO] Searching registry for some deployed application hosts > > [INFO] Found service on: lonestar4.tacc.teragrid.org > > [INFO] Found service on: lonestar4.tacc.teragrid.org > > [INFO] -----DATA----- > > [INFO] Finish scheduling > > [INFO] -----END DATA----- > > null > > [INFO] Proxy file renewed to > > /tmp/x509up_upedrorcsed4c4290-90e6-40a6-bfe7-3c5239da1b7c for the user > > pedrorcs with 3600 lifetime. > > [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811 > > =//scratch/00091/tg458470/Phonon > > [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811 > > > =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d > > [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811 > > > =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData > > [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811 > > > =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/outputData > > org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f > > [INFO] The remote file is > > > ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input > > [INFO] Uploading file > > [INFO] Upload file > > > to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input > > is done > > org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f > > [INFO] The remote file is > > > ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3 > > [INFO] Uploading file > > [INFO] Upload file > > > to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3 > > is done > > org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f > > [INFO] The remote file is > > > ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb > > [INFO] Uploading file > > [INFO] Upload file > > > to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb > > is done > > [INFO] -----DATA----- > > [INFO] Start execution > > [INFO] -----END DATA----- > > org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f > > [INFO] -----DATA----- > > [INFO] Finished launching job, Host = lonestar4.tacc.teragrid.org RSL = > &( > > queue = "development" )( stdout = > > > "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/lonestar_application.stdout" > > )( count = "12" )( executable = "/scratch/00091/tg458470/executePwscf.sh" > > )( stderr = > > > "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/lonestar_application.stderr" > > )( maxwalltime = "20" )( hostCount = "1" )( minmemory = "1024" )( > project = > > "TG-TRA120030" )( jobtype = "mpi" )( environment = ( "inputData" > > > "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData" > > ) ( "outputData" > > > "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/outputData" > > ) )( proxy_timeout = "1" )( arguments = > > > "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input" > > > "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3" > > > "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb" > > )( directory = > > > "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d" > > )( maxmemory = "2048" ) working directory = > > > /scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d > > temp directory = /scratch/00091/tg458470/Phonon Globus GateKeeper > Endpoint > > = gridftp1.ls4.tacc.utexas.edu:2119/jobmanager-sge > > [INFO] -----END DATA----- > > > ================================================================================================================= > > > > > > Thank you so much, > > > > > > Pedro da Silveira > >
