According to Gram user guide [1], executable file permission does not allow execution. This guide can help you with gram error codes.
Thanks Raminder 1. http://www.globus.org/toolkit/docs/4.0/execution/prewsgram/user-index.html On Feb 6, 2013, at 4:52 PM, Pedro da Silveira wrote: > Hi Raminder, > > I tested the task submission again. My workflow has 2 application services > and 4 inputs total. Those 2 tasks run in less than 5 minutes, it is a just > a test. > The first application services ran successfully (File transfer and job), > but the second application services didn't. The second application services > got the files transfer correctly, but did not submit the task to PBS. The > Airavata server was constantly printing "Job Error Code: 72". > Do you know what could possibly cause this message? > > This is the Airavata-Server log messages: > > [INFO] -----END DATA----- > [INFO] Status is zero > [INFO] Status of job > https://gridftp1.ls4.tacc.utexas.edu:50383/16289984330111623786/8943296923859958664/isFAILED > [INFO] -----DATA----- > [INFO] Status of job > https://gridftp1.ls4.tacc.utexas.edu:50383/16289984330111623786/8943296923859958664/isFAILED > [INFO] -----END DATA----- > [INFO] Job Error Code: 72 > [ERROR] Context passed was NULL. > java.lang.RuntimeException: Context passed was NULL. > at > org.apache.airavata.workflow.tracking.impl.ProvenanceNotifierImpl.sendingFault(ProvenanceNotifierImpl.java:496) > at > org.apache.airavata.workflow.tracking.impl.ProvenanceNotifierImpl.sendingFault(ProvenanceNotifierImpl.java:485) > at > org.apache.airavata.core.gfac.notification.impl.WorkflowTrackingNotification.executionFail(WorkflowTrackingNotification.java:108) > at > org.apache.airavata.core.gfac.notification.impl.DefaultNotifier.executionFail(DefaultNotifier.java:135) > at > org.apache.airavata.core.gfac.provider.impl.GramProvider.executeApplication(GramProvider.java:225) > at > org.apache.airavata.core.gfac.provider.AbstractProvider.execute(AbstractProvider.java:69) > at > org.apache.airavata.core.gfac.services.impl.AbstractSimpleService.execute(AbstractSimpleService.java:118) > at org.apache.airavata.core.gfac.GfacAPI.gridJobSubmit(GfacAPI.java:140) > at > org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:256) > at > org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.handleWSComponent(WorkflowInterpreter.java:749) > at > org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.executeDynamically(WorkflowInterpreter.java:533) > at > org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.scheduleDynamically(WorkflowInterpreter.java:218) > at > org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:389) > at > org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.access$400(WorkflowInterpretorSkeleton.java:87) > at > org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton$2.run(WorkflowInterpretorSkeleton.java:382) > at java.lang.Thread.run(Thread.java:680) > [INFO] -----DATA----- > [INFO] Job Protocol : https > Host name : gridftp1.ls4.tacc.utexas.edu > Port number : 50383 > Url path : 16289984330111623786/8943296923859958664/ > User : null > Pwd : null > on host lonestar4.tacc.teragrid.org Job Exit Code = 72 > [INFO] -----END DATA----- > [ERROR] Job Protocol : https > Host name : gridftp1.ls4.tacc.utexas.edu > Port number : 50383 > Url path : 16289984330111623786/8943296923859958664/ > User : null > Pwd : null > on host lonestar4.tacc.teragrid.org Job Exit Code = 72 > org.apache.airavata.core.gfac.exception.JobSubmissionFault: Job Protocol > : https > Host name : gridftp1.ls4.tacc.utexas.edu > Port number : 50383 > Url path : 16289984330111623786/8943296923859958664/ > User : null > Pwd : null > on host lonestar4.tacc.teragrid.org Job Exit Code = 72 > at > org.apache.airavata.core.gfac.provider.impl.GramProvider.executeApplication(GramProvider.java:222) > at > org.apache.airavata.core.gfac.provider.AbstractProvider.execute(AbstractProvider.java:69) > at > org.apache.airavata.core.gfac.services.impl.AbstractSimpleService.execute(AbstractSimpleService.java:118) > at org.apache.airavata.core.gfac.GfacAPI.gridJobSubmit(GfacAPI.java:140) > at > org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:256) > at > org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.handleWSComponent(WorkflowInterpreter.java:749) > at > org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.executeDynamically(WorkflowInterpreter.java:533) > at > org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.scheduleDynamically(WorkflowInterpreter.java:218) > at > org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:389) > at > org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.access$400(WorkflowInterpretorSkeleton.java:87) > at > org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton$2.run(WorkflowInterpretorSkeleton.java:382) > at java.lang.Thread.run(Thread.java:680) > Caused by: java.lang.Exception: Job Protocol : https > Host name : gridftp1.ls4.tacc.utexas.edu > Port number : 50383 > Url path : 16289984330111623786/8943296923859958664/ > User : null > Pwd : null > on host lonestar4.tacc.teragrid.org Job Exit Code = 72 > ... 12 more > Exception in thread "Thread-67" > org.apache.airavata.workflow.model.exceptions.WorkflowRuntimeException: > org.apache.airavata.workflow.model.exceptions.WorkflowException: Job > Protocol : https > Host name : gridftp1.ls4.tacc.utexas.edu > Port number : 50383 > Url path : 16289984330111623786/8943296923859958664/ > User : null > Pwd : null > on host lonestar4.tacc.teragrid.org Job Exit Code = 72 > at > org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:392) > at > org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.access$400(WorkflowInterpretorSkeleton.java:87) > at > org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton$2.run(WorkflowInterpretorSkeleton.java:382) > at java.lang.Thread.run(Thread.java:680) > Caused by: org.apache.airavata.workflow.model.exceptions.WorkflowException: > Job Protocol : https > Host name : gridftp1.ls4.tacc.utexas.edu > Port number : 50383 > Url path : 16289984330111623786/8943296923859958664/ > User : null > Pwd : null > on host lonestar4.tacc.teragrid.org Job Exit Code = 72 > at > org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:321) > at > org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.handleWSComponent(WorkflowInterpreter.java:749) > at > org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.executeDynamically(WorkflowInterpreter.java:533) > at > org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.scheduleDynamically(WorkflowInterpreter.java:218) > at > org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:389) > ... 3 more > Caused by: org.apache.airavata.core.gfac.exception.JobSubmissionFault: Job > Protocol : https > Host name : gridftp1.ls4.tacc.utexas.edu > Port number : 50383 > Url path : 16289984330111623786/8943296923859958664/ > User : null > Pwd : null > on host lonestar4.tacc.teragrid.org Job Exit Code = 72 > at > org.apache.airavata.core.gfac.provider.impl.GramProvider.executeApplication(GramProvider.java:222) > at > org.apache.airavata.core.gfac.provider.AbstractProvider.execute(AbstractProvider.java:69) > at > org.apache.airavata.core.gfac.services.impl.AbstractSimpleService.execute(AbstractSimpleService.java:118) > at org.apache.airavata.core.gfac.GfacAPI.gridJobSubmit(GfacAPI.java:140) > at > org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:256) > ... 7 more > Caused by: java.lang.Exception: Job Protocol : https > Host name : gridftp1.ls4.tacc.utexas.edu > Port number : 50383 > Url path : 16289984330111623786/8943296923859958664/ > User : null > Pwd : null > on host lonestar4.tacc.teragrid.org Job Exit Code = 72 > ... 12 more > > > Thank you, > > > > > > On Wed, Feb 6, 2013 at 9:23 AM, Raminder Singh > <[email protected]>wrote: > >> Hi Pedro, >> >> Can you check space in home directory of your account on Lonestar? I have >> seen such problem if you cross disk quota. Gram does not give any error >> and job does not go into queue. If quota is fine then we need to debug more. >> >> Thanks >> Raminder >> >> On Feb 5, 2013, at 7:49 PM, Pedro da Silveira wrote: >> >>> Hi Dev, >>> >>> I am trying to submit a workflow using my Xsede account using Xbaya. It >> has >>> worked successfully using "ogce" account. >>> I changed the file "airavata-server.properties" to use my Xsede portal >>> account. >>> >>> myproxy.user=pedrorcs >>> myproxy.pass=****** >>> >>> I also changed the Application Service to use a different settings like >> my >>> user $SCRATCH directory. >>> >>> Executable path: >>> /scratch/00091/tg458470/executePwscf.sh >>> >>> Scratch Working directory: >>> /scratch/00091/tg458470/Phonon >>> >>> I set the workflow to run then I setup correctly the local path to input >>> files on my desktop. >>> All input files got transferred correctly, but the job were never not >>> submitted to PBS. >>> Can someone please clarify if I am doing something wrong? >>> >>> This is the log on Airavata-Server: >>> >>> >> ================================================================================================================= >>> [INFO] Experiment launched >>> :SimplePhonon_01a4d374-486f-4948-937f-a9de4b2b45eb >>> [INFO] -----DATA----- >>> [INFO] Start scheduling >>> [INFO] -----END DATA----- >>> [INFO] Searching registry for some deployed application hosts >>> [INFO] Found service on: lonestar4.tacc.teragrid.org >>> [INFO] Found service on: lonestar4.tacc.teragrid.org >>> [INFO] -----DATA----- >>> [INFO] Finish scheduling >>> [INFO] -----END DATA----- >>> null >>> [INFO] Proxy file renewed to >>> /tmp/x509up_upedrorcsed4c4290-90e6-40a6-bfe7-3c5239da1b7c for the user >>> pedrorcs with 3600 lifetime. >>> [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811 >>> =//scratch/00091/tg458470/Phonon >>> [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811 >>> >> =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d >>> [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811 >>> >> =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData >>> [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811 >>> >> =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/outputData >>> org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f >>> [INFO] The remote file is >>> >> ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input >>> [INFO] Uploading file >>> [INFO] Upload file >>> >> to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input >>> is done >>> org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f >>> [INFO] The remote file is >>> >> ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3 >>> [INFO] Uploading file >>> [INFO] Upload file >>> >> to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3 >>> is done >>> org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f >>> [INFO] The remote file is >>> >> ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb >>> [INFO] Uploading file >>> [INFO] Upload file >>> >> to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb >>> is done >>> [INFO] -----DATA----- >>> [INFO] Start execution >>> [INFO] -----END DATA----- >>> org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f >>> [INFO] -----DATA----- >>> [INFO] Finished launching job, Host = lonestar4.tacc.teragrid.org RSL = >> &( >>> queue = "development" )( stdout = >>> >> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/lonestar_application.stdout" >>> )( count = "12" )( executable = "/scratch/00091/tg458470/executePwscf.sh" >>> )( stderr = >>> >> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/lonestar_application.stderr" >>> )( maxwalltime = "20" )( hostCount = "1" )( minmemory = "1024" )( >> project = >>> "TG-TRA120030" )( jobtype = "mpi" )( environment = ( "inputData" >>> >> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData" >>> ) ( "outputData" >>> >> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/outputData" >>> ) )( proxy_timeout = "1" )( arguments = >>> >> "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input" >>> >> "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3" >>> >> "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb" >>> )( directory = >>> >> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d" >>> )( maxmemory = "2048" ) working directory = >>> >> /scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d >>> temp directory = /scratch/00091/tg458470/Phonon Globus GateKeeper >> Endpoint >>> = gridftp1.ls4.tacc.utexas.edu:2119/jobmanager-sge >>> [INFO] -----END DATA----- >>> >> ================================================================================================================= >>> >>> >>> Thank you so much, >>> >>> >>> Pedro da Silveira >> >>
