Marlon,
I'm finding all the structures I'm trying to use. Do the other
thrift files get pulled in with the include lines?
I got to the point of trying to launch an experiment but ran into
an error. Maybe I'm missing a field in my experiment? Does anyone
have a blow-by-blow set of steps for creating a project, creating
an experiment, launching the experiment?
./Airavata-remote -h localhost:8930 getAllUserExperiments kenneth1
[ Experiment(userName='kenneth1', experimentOutputs=[], errors=None,
applicationVersion=None, name='dateexperiment', workflowTemplateId=None,
projectID='test1_cfe50d5c-6d70-4119-a485-f879943ecfea',
stateChangeList=[WorkflowNodeStatus(timeOfStateChange=1420844997906,
workflowNodeState=7)], creationTime=1420844856258,
workflowNodeDetailsList=[WorkflowNodeDetails(nodeInstanceId='IDontNeedaNode_ff3cbbb8-e752-4be6-916d-b3a0fc252826',
errors=[], nodeName='IDontNeedaNode', nodeOutputs=[], executionUnitData=None,
workflowNodeStatus=WorkflowNodeStatus(timeOfStateChange=1420844997906,
workflowNodeState=7), creationTime=1420844997871, executionUnit=1,
taskDetailsList=[TaskDetails(applicationInputs=[], errors=[],
applicationVersion=None, applicationOutputs=[], applicationDeploymentId=None,
advancedOutputDataHandling=None, creationTime=None, dataTransferDetailsList=[],
taskStatus=TaskStatus(timeOfStateChange=1420844997950, executionState=12),
advancedInputDataHandling=None,
taskID='IDontNeedaNode_7b028bba-52b7-402a-b9d2-41b43796d675',
jobDetailsList=[], taskScheduling=None,
applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee')],
nodeInputs=[])],
experimentID='dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0',
workflowTemplateVersion=None, workflowExecutionInstanceId=None,
userConfigurationData=None, experimentInputs=[],
experimentStatus=ExperimentStatus(timeOfStateChange=1420844856279,
experimentState=0),
applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee',
description=None)]
./Airavata-remote -h localhost:8930 launchExperiment
dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0 runme
Traceback (most recent call last):
File "./Airavata-remote", line 301, in <module>
pp.pprint(client.launchExperiment(args[0],args[1],))
File
"/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py",
line 2572, in launchExperiment
self.recv_launchExperiment()
File
"/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py",
line 2589, in recv_launchExperiment
raise x
thrift.Thrift.TApplicationException: Internal error processing launchExperiment
From the server console:
[ERROR] Error occurred during processing of message.
java.lang.NullPointerException
at
org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator.validate(SimpleAppDataValidator.java:50)
at
org.apache.airavata.orchestrator.cpi.impl.SimpleOrchestratorImpl.validateExperiment(SimpleOrchestratorImpl.java:120)
at
org.apache.airavata.orchestrator.server.OrchestratorServerHandler.validateExperiment(OrchestratorServerHandler.java:252)
at
org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:552)
at
org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:536)
at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
at
org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:701)
[ERROR] Internal error processing launchExperiment
org.apache.thrift.transport.TTransportException
at
org.apache.thrift.transport.TIOStreamTransport.read(TIOStreamTransport.java:132)
at org.apache.thrift.transport.TTransport.readAll(TTransport.java:84)
at
org.apache.thrift.protocol.TBinaryProtocol.readAll(TBinaryProtocol.java:362)
at
org.apache.thrift.protocol.TBinaryProtocol.readI32(TBinaryProtocol.java:284)
at
org.apache.thrift.protocol.TBinaryProtocol.readMessageBegin(TBinaryProtocol.java:191)
at org.apache.thrift.TServiceClient.receiveBase(TServiceClient.java:69)
at
org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.recv_validateExperiment(OrchestratorService.java:239)
at
org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.validateExperiment(OrchestratorService.java:226)
at
org.apache.airavata.api.server.handler.AiravataServerHandler.launchExperiment(AiravataServerHandler.java:1118)
at
org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8929)
at
org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8913)
at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
at
org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:701)
On Fri, Jan 09, 2015 at 04:48:09PM -0500, Marlon Pierce wrote:
> Hi Kenneth--
>
> You'll probably run into problems with the python bindings, but it is an
> easy fix (I think). The thrift files need to specify the language
> bindings you want. Only three of the thrift files have python bindings
> set up.
>
> Marlon
>
>
> thrift-interface-descriptions mpierce$ find . -type f -exec grep -il
> "namespace py" {} \;
> ./airavataAPI.thrift
> ./airavataErrors.thrift
> ./workflowAPI.thrift
>
>
> On 1/9/15 4:15 PM, K Yoshimoto wrote:
> >Okay, looks like the C in Compute needs to be capitalized.
> >I must have typoed that.
> >
> >On Fri, Jan 09, 2015 at 11:46:32AM -0800, K Yoshimoto wrote:
> >>Marlon,
> >>
> >> I can do the startup with ./airavata-server.sh for now.
> >>
> >> I'm trying to go through the steps of creating my own app and
> >>launching it using the Python client. I ran into a problem with
> >>a method not found in the client:
> >>
> >>In
> >>airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api
> >>
> >>./Airavata-remote -h localhost:8930 getAllcomputeResourceNames
> >>Unrecognized method getAllcomputeResourceNames
> >>
> >> Should the python client be up-to-date?
> >>
> >>Kenneth
> >>
> >>On Thu, Jan 08, 2015 at 08:08:58PM -0500, Marlon Pierce wrote:
> >>>Hi Ken--
> >>>
> >>>Thanks--feel free to fix the startup script and submit a patch.
> >>>
> >>>Marlon
> >>>
> >>>On 1/8/15 6:28 PM, K Yoshimoto wrote:
> >>>>I grabbed the source release from
> >>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> >>>>
> >>>>and built that. The server startup script is still broken for
> >>>>Ubuntu when run as the quick start describes (sh airavata-server.sh),
> >>>>but works when invoked as ./airavata-server.sh.
> >>>>
> >>>>Registering sample apps and xbaya workflow construction work.
> >>>>Not sure when the xbaya workflow construction would be useful?
> >>>>Running the workflow generates output in /tmp.
> >>>>
> >>>>I would like to try creating new experiments and running them.
> >>>>I will be playing with the python client. Are all the samples in
> >>>>airavata-0.14/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples
> >>>>
> >>>>up-to-date? I'll probably go by them to try registering new experiments
> >>>>and running them with the python client, unless anyone has documentation
> >>>>handy.
> >>>>
> >>>>Kenneth
> >>>>
> >>>>On Wed, Jan 07, 2015 at 12:56:00PM -0500, Marlon Pierce wrote:
> >>>>>We also run the server components (not XBaya) full time and run daily
> >>>>>tests against it as part of test-drive.airavata.org.
> >>>>>
> >>>>>Marlon
> >>>>>
> >>>>>On 1/7/15 12:31 PM, K Yoshimoto wrote:
> >>>>>>Was it stable enough to use outside the demo? Any problems to note?
> >>>>>>
> >>>>>>On Wed, Jan 07, 2015 at 10:48:58PM +0530, Suresh Marru wrote:
> >>>>>>>+ 1 for the release.
> >>>>>>>
> >>>>>>>P.S. I was able to demo this RC2 in a talk and couple of participants
> >>>>>>>followed along successfully.
> >>>>>>>
> >>>>>>>
> >>>>>>>On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena
> >>>>>>><[email protected]>
> >>>>>>>wrote:
> >>>>>>>
> >>>>>>>>Apache Airavata PMC is pleased to call for a vote on the following
> >>>>>>>>Apache Airavata 0.14 release candidate artifacts:
> >>>>>>>>
> >>>>>>>>Detailed change log/release notes:
> >>>>>>>>
> >>>>>>>>https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>All Release Artifacts:
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>PGP release keys (signed using 65541DBC):
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/release/airavata/KEYS
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>Specific URL's:
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>GIT source tag:
> >>>>>>>>https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
> >>>>>>>>
> >>>>>>>>Source release:
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
> >>>>>>>>
> >>>>>>>>Binary Artifacts:
> >>>>>>>>
> >>>>>>>>Airavata Server:
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
> >>>>>>>>
> >>>>>>>>API Server
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
> >>>>>>>>
> >>>>>>>>GFac Server
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
> >>>>>>>>
> >>>>>>>>Orchestrator Server
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
> >>>>>>>>
> >>>>>>>>Xbaya Distribution
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
> >>>>>>>>
> >>>>>>>>Client SDKs
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
> >>>>>>>>
> >>>>>>>>Maven staging repo:
> >>>>>>>>https://repository.apache.org/content/repositories/orgapacheairavata-1005
> >>>>>>>>
> >>>>>>>>Please verify the artifacts and vote. The vote will be open for
> >>>>>>>>atleast
> >>>>>>>>72 hours.
> >>>>>>>>
> >>>>>>>>[ ] +1 approve
> >>>>>>>>[ ] +0 no opinion
> >>>>>>>>[ ] -1 disapprove (and reason why)
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>[ ] +1 approve
> >>>>>>>>[ ] +0 no opinion
> >>>>>>>>[ ] -1 disapprove (and reason why)
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
