I was able to launch the example experiment and get output from the Xbaya quickstart:
https://cwiki.apache.org/confluence/display/AIRAVATA/XBAYA+Quick-Start+Tutorial I am trying to create and launch my own custom experiment with the Airavata-remote python client. However, I'm getting this error on the server side: Caused by: org.apache.openjpa.lib.jdbc.ReportingSQLException: Column 'JOB_DESCRIPTION' cannot accept a NULL value. {prepstmnt 1346602387 INSERT INTO JOB_DETAIL (JOB_ID, TASK_ID, COMPUTE_RESOURCE_CONSUMED, CREATION_TIME, JOB_DESCRIPTION) VALUES (?, ?, ?, ?, ?) [params=(String) IDontNeedaNode_153cb823-1b52-400f-b458-c619fd69c9a6, (String) IDontNeedaNode_153cb823-1b52-400f-b458-c619fd69c9a6, (null) null, (Timestamp) 2015-01-21 10:16:28.985, (null) null]} [code=-1, state=23502] Where does JOB_DESCRIPTION get input into the experiment? Kenneth On Fri, Jan 16, 2015 at 02:46:20PM -0800, K Yoshimoto wrote: > > Is there a difference in the experiments that get created > through xbaya workflow creation and through commandline > createExperiment? I can clone and run the xbaya experiment > through the Python API client, but when I try creating my own > experiment, the run fails. Perhaps someone can send out > the attributes required by createExperiment for creating a runnable > experiment on localhost? > > Kenneth > > On Fri, Jan 09, 2015 at 03:26:39PM -0800, K Yoshimoto wrote: > > > > Marlon, > > > > I'm finding all the structures I'm trying to use. Do the other > > thrift files get pulled in with the include lines? > > > > I got to the point of trying to launch an experiment but ran into > > an error. Maybe I'm missing a field in my experiment? Does anyone > > have a blow-by-blow set of steps for creating a project, creating > > an experiment, launching the experiment? > > > > ./Airavata-remote -h localhost:8930 getAllUserExperiments kenneth1 > > [ Experiment(userName='kenneth1', experimentOutputs=[], errors=None, > > applicationVersion=None, name='dateexperiment', workflowTemplateId=None, > > projectID='test1_cfe50d5c-6d70-4119-a485-f879943ecfea', > > stateChangeList=[WorkflowNodeStatus(timeOfStateChange=1420844997906, > > workflowNodeState=7)], creationTime=1420844856258, > > workflowNodeDetailsList=[WorkflowNodeDetails(nodeInstanceId='IDontNeedaNode_ff3cbbb8-e752-4be6-916d-b3a0fc252826', > > errors=[], nodeName='IDontNeedaNode', nodeOutputs=[], > > executionUnitData=None, > > workflowNodeStatus=WorkflowNodeStatus(timeOfStateChange=1420844997906, > > workflowNodeState=7), creationTime=1420844997871, executionUnit=1, > > taskDetailsList=[TaskDetails(applicationInputs=[], errors=[], > > applicationVersion=None, applicationOutputs=[], > > applicationDeploymentId=None, advancedOutputDataHandling=None, > > creationTime=None, dataTransferDetailsList=[], > > taskStatus=TaskStatus(timeOfStateChange=1420844997950, executionState=12), > > advancedInputDataHandling=None, > > taskID='IDontNeedaNode_7b028bba-52b7-402a-b9d2-41b43796d675', > > jobDetailsList=[], taskScheduling=None, > > applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee')], > > nodeInputs=[])], > > experimentID='dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0', > > workflowTemplateVersion=None, workflowExecutionInstanceId=None, > > userConfigurationData=None, experimentInputs=[], > > experimentStatus=ExperimentStatus(timeOfStateChange=1420844856279, > > experimentState=0), > > applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee', > > description=None)] > > > > ./Airavata-remote -h localhost:8930 launchExperiment > > dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0 runme > > Traceback (most recent call last): > > File "./Airavata-remote", line 301, in <module> > > pp.pprint(client.launchExperiment(args[0],args[1],)) > > File > > "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py", > > line 2572, in launchExperiment > > self.recv_launchExperiment() > > File > > "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py", > > line 2589, in recv_launchExperiment > > raise x > > thrift.Thrift.TApplicationException: Internal error processing > > launchExperiment > > > > > > From the server console: > > > > [ERROR] Error occurred during processing of message. > > java.lang.NullPointerException > > at > > org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator.validate(SimpleAppDataValidator.java:50) > > at > > org.apache.airavata.orchestrator.cpi.impl.SimpleOrchestratorImpl.validateExperiment(SimpleOrchestratorImpl.java:120) > > at > > org.apache.airavata.orchestrator.server.OrchestratorServerHandler.validateExperiment(OrchestratorServerHandler.java:252) > > at > > org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:552) > > at > > org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:536) > > at > > org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39) > > at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39) > > at > > org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225) > > at > > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146) > > at > > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) > > at java.lang.Thread.run(Thread.java:701) > > [ERROR] Internal error processing launchExperiment > > org.apache.thrift.transport.TTransportException > > at > > org.apache.thrift.transport.TIOStreamTransport.read(TIOStreamTransport.java:132) > > at > > org.apache.thrift.transport.TTransport.readAll(TTransport.java:84) > > at > > org.apache.thrift.protocol.TBinaryProtocol.readAll(TBinaryProtocol.java:362) > > > > at > > org.apache.thrift.protocol.TBinaryProtocol.readI32(TBinaryProtocol.java:284) > > > > at > > org.apache.thrift.protocol.TBinaryProtocol.readMessageBegin(TBinaryProtocol.java:191) > > at > > org.apache.thrift.TServiceClient.receiveBase(TServiceClient.java:69) > > at > > org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.recv_validateExperiment(OrchestratorService.java:239) > > at > > org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.validateExperiment(OrchestratorService.java:226) > > at > > org.apache.airavata.api.server.handler.AiravataServerHandler.launchExperiment(AiravataServerHandler.java:1118) > > at > > org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8929) > > at > > org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8913) > > at > > org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39) > > at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39) > > at > > org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225) > > at > > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146) > > at > > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) > > at java.lang.Thread.run(Thread.java:701) > > > > > > On Fri, Jan 09, 2015 at 04:48:09PM -0500, Marlon Pierce wrote: > > > Hi Kenneth-- > > > > > > You'll probably run into problems with the python bindings, but it is an > > > easy fix (I think). The thrift files need to specify the language > > > bindings you want. Only three of the thrift files have python bindings > > > set up. > > > > > > Marlon > > > > > > > > > thrift-interface-descriptions mpierce$ find . -type f -exec grep -il > > > "namespace py" {} \; > > > ./airavataAPI.thrift > > > ./airavataErrors.thrift > > > ./workflowAPI.thrift > > > > > > > > > On 1/9/15 4:15 PM, K Yoshimoto wrote: > > > >Okay, looks like the C in Compute needs to be capitalized. > > > >I must have typoed that. > > > > > > > >On Fri, Jan 09, 2015 at 11:46:32AM -0800, K Yoshimoto wrote: > > > >>Marlon, > > > >> > > > >> I can do the startup with ./airavata-server.sh for now. > > > >> > > > >> I'm trying to go through the steps of creating my own app and > > > >>launching it using the Python client. I ran into a problem with > > > >>a method not found in the client: > > > >> > > > >>In > > > >>airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api > > > >> > > > >>./Airavata-remote -h localhost:8930 getAllcomputeResourceNames > > > >>Unrecognized method getAllcomputeResourceNames > > > >> > > > >> Should the python client be up-to-date? > > > >> > > > >>Kenneth > > > >> > > > >>On Thu, Jan 08, 2015 at 08:08:58PM -0500, Marlon Pierce wrote: > > > >>>Hi Ken-- > > > >>> > > > >>>Thanks--feel free to fix the startup script and submit a patch. > > > >>> > > > >>>Marlon > > > >>> > > > >>>On 1/8/15 6:28 PM, K Yoshimoto wrote: > > > >>>>I grabbed the source release from > > > >>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/ > > > >>>> > > > >>>>and built that. The server startup script is still broken for > > > >>>>Ubuntu when run as the quick start describes (sh airavata-server.sh), > > > >>>>but works when invoked as ./airavata-server.sh. > > > >>>> > > > >>>>Registering sample apps and xbaya workflow construction work. > > > >>>>Not sure when the xbaya workflow construction would be useful? > > > >>>>Running the workflow generates output in /tmp. > > > >>>> > > > >>>>I would like to try creating new experiments and running them. > > > >>>>I will be playing with the python client. Are all the samples in > > > >>>>airavata-0.14/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples > > > >>>> > > > >>>>up-to-date? I'll probably go by them to try registering new > > > >>>>experiments > > > >>>>and running them with the python client, unless anyone has > > > >>>>documentation > > > >>>>handy. > > > >>>> > > > >>>>Kenneth > > > >>>> > > > >>>>On Wed, Jan 07, 2015 at 12:56:00PM -0500, Marlon Pierce wrote: > > > >>>>>We also run the server components (not XBaya) full time and run daily > > > >>>>>tests against it as part of test-drive.airavata.org. > > > >>>>> > > > >>>>>Marlon > > > >>>>> > > > >>>>>On 1/7/15 12:31 PM, K Yoshimoto wrote: > > > >>>>>>Was it stable enough to use outside the demo? Any problems to note? > > > >>>>>> > > > >>>>>>On Wed, Jan 07, 2015 at 10:48:58PM +0530, Suresh Marru wrote: > > > >>>>>>>+ 1 for the release. > > > >>>>>>> > > > >>>>>>>P.S. I was able to demo this RC2 in a talk and couple of > > > >>>>>>>participants > > > >>>>>>>followed along successfully. > > > >>>>>>> > > > >>>>>>> > > > >>>>>>>On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena > > > >>>>>>><[email protected]> > > > >>>>>>>wrote: > > > >>>>>>> > > > >>>>>>>>Apache Airavata PMC is pleased to call for a vote on the following > > > >>>>>>>>Apache Airavata 0.14 release candidate artifacts: > > > >>>>>>>> > > > >>>>>>>>Detailed change log/release notes: > > > >>>>>>>> > > > >>>>>>>>https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14 > > > >>>>>>>> > > > >>>>>>>> > > > >>>>>>>>All Release Artifacts: > > > >>>>>>>> > > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/ > > > >>>>>>>> > > > >>>>>>>> > > > >>>>>>>>PGP release keys (signed using 65541DBC): > > > >>>>>>>> > > > >>>>>>>>https://dist.apache.org/repos/dist/release/airavata/KEYS > > > >>>>>>>> > > > >>>>>>>> > > > >>>>>>>>Specific URL's: > > > >>>>>>>> > > > >>>>>>>> > > > >>>>>>>>GIT source tag: > > > >>>>>>>>https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14 > > > >>>>>>>> > > > >>>>>>>>Source release: > > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip > > > >>>>>>>> > > > >>>>>>>>Binary Artifacts: > > > >>>>>>>> > > > >>>>>>>>Airavata Server: > > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip > > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz > > > >>>>>>>> > > > >>>>>>>>API Server > > > >>>>>>>> > > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz > > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip > > > >>>>>>>> > > > >>>>>>>>GFac Server > > > >>>>>>>> > > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz > > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip > > > >>>>>>>> > > > >>>>>>>>Orchestrator Server > > > >>>>>>>> > > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz > > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip > > > >>>>>>>> > > > >>>>>>>>Xbaya Distribution > > > >>>>>>>> > > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz > > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip > > > >>>>>>>> > > > >>>>>>>>Client SDKs > > > >>>>>>>> > > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz > > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip > > > >>>>>>>> > > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz > > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip > > > >>>>>>>> > > > >>>>>>>>Maven staging repo: > > > >>>>>>>>https://repository.apache.org/content/repositories/orgapacheairavata-1005 > > > >>>>>>>> > > > >>>>>>>>Please verify the artifacts and vote. The vote will be open for > > > >>>>>>>>atleast > > > >>>>>>>>72 hours. > > > >>>>>>>> > > > >>>>>>>>[ ] +1 approve > > > >>>>>>>>[ ] +0 no opinion > > > >>>>>>>>[ ] -1 disapprove (and reason why) > > > >>>>>>>> > > > >>>>>>>> > > > >>>>>>>>[ ] +1 approve > > > >>>>>>>>[ ] +0 no opinion > > > >>>>>>>>[ ] -1 disapprove (and reason why) > > > >>>>>>>> > > > >>>>>>>> > > > >>>>>>>> > > > >>>>>>>>
