Hi –
(Resending because I was not subscribed to the mailing list prior.)
I’m trying to install arrow on a docker image with R on it but R gives me
always the
“error in io___ReadableFile__Open(clean_path_abs(path)) :
Cannot call io___ReadableFile__Open(). Please use arrow::install_arrow() to
install required runtime libraries.”
error.
Below the details:
1. The docker image.
FROM rocker/tidyverse
ENV DEBIAN_FRONTEND noninteractive
RUN apt-get install -y -V \
build-essential \
cmake \
libboost-filesystem-dev \
libboost-regex-dev \
libboost-system-dev
RUN apt update && \
apt install -y -V \
autoconf-archive \
gtk-doc-tools \
libgirepository1.0-dev \
libglib2.0-doc \
libtool \
pkg-config && \
apt clean && \
rm -rf /var/lib/apt/lists/*
2. Then within an interactive session (interactive so that I can debug
easier) I run the actual cmake (I downloaded the arrow package manually). This
is straight from https://arrow.apache.org/docs/developers/cpp.html.
cd arrow/cpp
mkdir release
cd release
cmake ..
make
3. After number 2 finishing successfully I start R and try
“install.packages(‘arrow’)” which succeeds (builds it from source), but then I
get back to the error above.
4. install_arrow() just directs me to the link in number 2.
I have the feeling the R package installation can’t find the path with the
arrow installation, however I can’t find any environment variable that would
handle this.
Please let us know. At this point we spent many hours trying to get it to work
– but this has to be an issue people have come across.
I’m not using conda so this (the only thing comparable that I could find) is
not applicable to me:
https://github.com/apache/arrow/issues/4399
Happy to provide further details. I also attached the full console log.
Christian
Christian Klar
TFG Asset Management
Tetragon Financial Management
399 Park Avenue, 22nd Floor | New York, NY 10022 | United States
Direct: +1 212 359 7369 | Main: +1 212 359 7300 | Mobile: +1 607 216 5045
ck...@tetragoninv.com<mailto:ck...@tetragoninv.com>
www.tetragoninv.com<http://www.tetragoninv.com>
This communication and all or some of the information contained therein may be
confidential. If you have received this communication in error, please destroy
all electronic and paper copies and notify the sender immediately. Unless
specifically indicated, this communication is not a confirmation, an offer to
sell or solicitation of any offer to buy any financial product, or an official
statement of Tetragon Financial Group or its affiliates. TFG Asset Management
L.P. and Tetragon Financial Management LP are registered as investment advisers
under the U.S. Investment Advisers Act of 1940.
cklar@nyc-poly-tci-03:~/Desktop/Docker/arrow$ docker run -v
/home/cklar/Desktop/tmpshare:/hello -it arrowtest /bin/bash
root@66311c2b2dc5:/# cd hello
root@66311c2b2dc5:/hello# cd hell^C
root@66311c2b2dc5:/hello# ls
arrow-master arrow-master.zip CLOPROCESS_TrancheHistory_Expense.arrow
root@66311c2b2dc5:/hello# cd arrow-master
root@66311c2b2dc5:/hello/arrow-master# ls
appveyor.yml cmake-format.py csharp format java
matlab README.md testing
c_glib CODE_OF_CONDUCT.md dev go js
NOTICE.txt ruby
CHANGELOG.md CONTRIBUTING.md docker-compose.yml header LICENSE.txt
python run-cmake-format.py
ci cpp docs integration
Makefile.docker r rust
root@66311c2b2dc5:/hello/arrow-master# cd cpp
root@66311c2b2dc5:/hello/arrow-master/cpp# mkdir release
root@66311c2b2dc5:/hello/arrow-master/cpp# cd release
root@66311c2b2dc5:/hello/arrow-master/cpp/release# cmake
Usage
cmake [options] <path-to-source>
cmake [options] <path-to-existing-build>
Specify a source directory to (re-)generate a build system for it in the
current working directory. Specify an existing build directory to
re-generate its build system.
Run 'cmake --help' for more information.
root@66311c2b2dc5:/hello/arrow-master/cpp/release# cmake ..
-- Building using CMake version: 3.7.2
-- The C compiler identification is GNU 6.3.0
-- The CXX compiler identification is GNU 6.3.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Arrow version: 1.0.0 (full: '1.0.0-SNAPSHOT')
-- Arrow SO version: 100 (full: 100.0.0)
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29")
-- clang-tidy not found
-- clang-format not found
-- infer not found
-- Found PythonInterp: /usr/bin/python (found version "2.7.13")
-- Found cpplint executable at /hello/arrow-master/cpp/build-support/cpplint.py
-- Performing Test CXX_SUPPORTS_SSE4_2
-- Performing Test CXX_SUPPORTS_SSE4_2 - Success
-- Performing Test CXX_SUPPORTS_ALTIVEC
-- Performing Test CXX_SUPPORTS_ALTIVEC - Failed
-- Performing Test CXX_SUPPORTS_ARMCRC
-- Performing Test CXX_SUPPORTS_ARMCRC - Failed
-- Performing Test CXX_SUPPORTS_ARMV8_CRC_CRYPTO
-- Performing Test CXX_SUPPORTS_ARMV8_CRC_CRYPTO - Failed
-- Arrow build warning level: PRODUCTION
Using ld linker
Configured for RELEASE build (set with cmake
-DCMAKE_BUILD_TYPE={release,debug,...})
-- Build Type: RELEASE
-- Using AUTO approach to find dependencies
-- AWSSDK_VERSION: 1.7.160
-- BOOST_VERSION: 1.67.0
-- BROTLI_VERSION: v1.0.7
-- BZIP2_VERSION: 1.0.8
-- CARES_VERSION: 1.15.0
-- GBENCHMARK_VERSION: v1.5.0
-- GFLAGS_VERSION: v2.2.0
-- GLOG_VERSION: v0.3.5
-- GRPC_VERSION: v1.24.3
-- GTEST_VERSION: 1.8.1
-- JEMALLOC_VERSION: 5.2.1
-- LZ4_VERSION: v1.9.2
-- MIMALLOC_VERSION: 270e765454f98e8bab9d42609b153425f749fff6
-- ORC_VERSION: 1.5.7
-- PROTOBUF_VERSION: v3.7.1
-- RAPIDJSON_VERSION: 2bbd33b33217ff4a73434ebf10cdac41e2ef5e34
-- RE2_VERSION: 2019-08-01
-- SNAPPY_VERSION: 1.1.7
-- THRIFT_VERSION: 0.12.0
-- THRIFT_MD5_CHECKSUM: 3deebbb4d1ca77dd9c9e009a1ea02183
-- ZLIB_VERSION: 1.2.11
-- ZSTD_VERSION: v1.4.3
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- Found Threads: TRUE
-- Boost version: 1.62.0
-- Found the following Boost libraries:
-- regex
-- system
-- filesystem
-- Boost include dir: /usr/include
-- Boost libraries: Boost::system;Boost::filesystem
-- Building without OpenSSL support. Minimum OpenSSL version 1.0.2 required.
-- Building (vendored) jemalloc from source
-- Could NOT find RapidJSONAlt (missing: RAPIDJSON_INCLUDE_DIR) (found
suitable version "2bbd33b33217ff4a73434ebf10cdac41e2ef5e34", minimum required
is "1.1.0")
-- Building rapidjson from source
-- Found hdfs.h at: /hello/arrow-master/cpp/thirdparty/hadoop/include/hdfs.h
-- CMAKE_C_FLAGS: -O3 -DNDEBUG -Wall -msse4.2
-- CMAKE_CXX_FLAGS: -Wno-noexcept-type -fdiagnostics-color=always -O3
-DNDEBUG -Wall -msse4.2
-- Looking for backtrace
-- Looking for backtrace - found
-- backtrace facility detected in default set of libraries
-- Found Backtrace: /usr/include
-- ---------------------------------------------------------------------
-- Arrow version: 1.0.0-SNAPSHOT
--
-- Build configuration summary:
-- Generator: Unix Makefiles
-- Build type: RELEASE
-- Source directory: /hello/arrow-master/cpp
-- Install prefix: /usr/local
--
-- Compile and link options:
-- Compiler flags to append when compiling Arrow ""
[default] [ARROW_CXXFLAGS]
-- Build static libraries ON
[default] [ARROW_BUILD_STATIC]
-- Build shared libraries ON
[default] [ARROW_BUILD_SHARED]
-- Exclude deprecated APIs from build OFF
[default] [ARROW_NO_DEPRECATED_API]
-- Use ccache when compiling (if available) ON
[default] [ARROW_USE_CCACHE]
-- Use ld.gold for linking on Linux (if available) OFF
[default] [ARROW_USE_LD_GOLD]
-- Build with SIMD optimizations ON
[default] [ARROW_USE_SIMD]
-- Build with SSE4.2 if compiler has support ON
[default] [ARROW_SSE42]
-- Build with Altivec if compiler has support ON
[default] [ARROW_ALTIVEC]
-- Build Arrow libraries with RATH set to $ORIGIN OFF
[default] [ARROW_RPATH_ORIGIN]
-- Build Arrow libraries with install_name set to @rpath ON
[default] [ARROW_INSTALL_NAME_RPATH]
-- Pass -ggdb flag to debug builds ON
[default] [ARROW_GGDB_DEBUG]
--
-- Test and benchmark options:
-- Build the Arrow examples OFF
[default] [ARROW_BUILD_EXAMPLES]
-- Build the Arrow googletest unit tests OFF
[default] [ARROW_BUILD_TESTS]
-- Build the Arrow integration test executables OFF
[default] [ARROW_BUILD_INTEGRATION]
-- Build the Arrow micro benchmarks OFF
[default] [ARROW_BUILD_BENCHMARKS]
-- Build the Arrow micro reference benchmarks OFF
[default] [ARROW_BUILD_BENCHMARKS_REFERENCE]
-- Linkage of Arrow libraries with unit tests executables.
"shared" [default] [ARROW_TEST_LINKAGE] [shared|static]
-- Build Arrow Fuzzing executables OFF
[default] [ARROW_FUZZING]
-- Enable unit tests which use large memory OFF
[default] [ARROW_LARGE_MEMORY_TESTS]
--
-- Lint options:
-- Only define the lint and check-format targets OFF
[default] [ARROW_ONLY_LINT]
-- If off, 'quiet' flags will be passed to linting tools OFF
[default] [ARROW_VERBOSE_LINT]
-- Build with C++ code coverage enabled OFF
[default] [ARROW_GENERATE_COVERAGE]
--
-- Checks options:
-- Run the test suite using valgrind --tool=memcheck OFF
[default] [ARROW_TEST_MEMCHECK]
-- Enable Address Sanitizer checks OFF
[default] [ARROW_USE_ASAN]
-- Enable Thread Sanitizer checks OFF
[default] [ARROW_USE_TSAN]
-- Enable Undefined Behavior sanitizer checks OFF
[default] [ARROW_USE_UBSAN]
--
-- Project component options:
-- Build Arrow commandline utilities OFF
[default] [ARROW_BUILD_UTILITIES]
-- Build the Arrow Compute Modules ON
[default] [ARROW_COMPUTE]
-- Build the Arrow CUDA extensions (requires CUDA toolkit) OFF
[default] [ARROW_CUDA]
-- Build the Arrow Dataset Modules ON
[default] [ARROW_DATASET]
-- Build the Arrow Filesystem Layer ON
[default] [ARROW_FILESYSTEM]
-- Build the Arrow Flight RPC System (requires GRPC, Protocol Buffers) OFF
[default] [ARROW_FLIGHT]
-- Build the Gandiva libraries OFF
[default] [ARROW_GANDIVA]
-- Build the Arrow HDFS bridge ON
[default] [ARROW_HDFS]
-- Build the HiveServer2 client and Arrow adapter OFF
[default] [ARROW_HIVESERVER2]
-- Build the Arrow IPC extensions ON
[default] [ARROW_IPC]
-- Build the Arrow jemalloc-based allocator ON
[default] [ARROW_JEMALLOC]
-- Build the Arrow JNI lib OFF
[default] [ARROW_JNI]
-- Build Arrow with JSON support (requires RapidJSON) ON
[default] [ARROW_JSON]
-- Build the Arrow mimalloc-based allocator OFF
[default] [ARROW_MIMALLOC]
-- Build the Parquet libraries OFF
[default] [ARROW_PARQUET]
-- Build the Arrow ORC adapter OFF
[default] [ARROW_ORC]
-- Build the plasma object store along with Arrow OFF
[default] [ARROW_PLASMA]
-- Build the plasma object store java client OFF
[default] [ARROW_PLASMA_JAVA_CLIENT]
-- Build the Arrow CPython extensions OFF
[default] [ARROW_PYTHON]
-- Build Arrow with S3 support (requires the AWS SDK for C++) OFF
[default] [ARROW_S3]
-- Build Arrow with TensorFlow support enabled OFF
[default] [ARROW_TENSORFLOW]
--
-- Thirdparty toolchain options:
-- Method to use for acquiring arrow's build dependencies
"AUTO" [default] [ARROW_DEPENDENCY_SOURCE] [AUTO|BUNDLED|SYSTEM|CONDA|BREW]
-- Show output from ExternalProjects rather than just logging to files OFF
[default] [ARROW_VERBOSE_THIRDPARTY_BUILD]
-- Rely on boost shared libraries where relevant ON
[default] [ARROW_BOOST_USE_SHARED]
-- Rely on Protocol Buffers shared libraries where relevant ON
[default] [ARROW_PROTOBUF_USE_SHARED]
-- Rely on GFlags shared libraries where relevant ON
[default] [ARROW_GFLAGS_USE_SHARED]
-- Build with backtrace support ON
[default] [ARROW_WITH_BACKTRACE]
-- Build libraries with glog support for pluggable logging OFF
[default] [ARROW_USE_GLOG]
-- Build with Brotli compression OFF
[default] [ARROW_WITH_BROTLI]
-- Build with BZ2 compression OFF
[default] [ARROW_WITH_BZ2]
-- Build with lz4 compression OFF
[default] [ARROW_WITH_LZ4]
-- Build with Snappy compression OFF
[default] [ARROW_WITH_SNAPPY]
-- Build with zlib compression OFF
[default] [ARROW_WITH_ZLIB]
-- Build with zstd compression OFF
[default] [ARROW_WITH_ZSTD]
--
-- Parquet options:
-- Depend only on Thirdparty headers to build libparquet. Always OFF if
building binaries
OFF
[default] [PARQUET_MINIMAL_DEPENDENCY]
-- Build the Parquet executable CLI tools. Requires static libraries to be
built.
OFF
[default] [PARQUET_BUILD_EXECUTABLES]
-- Build the Parquet examples. Requires static libraries to be built. OFF
[default] [PARQUET_BUILD_EXAMPLES]
-- Build support for encryption. Fail if OpenSSL is not found OFF
[default] [PARQUET_REQUIRE_ENCRYPTION]
--
-- Gandiva options:
-- Build the Gandiva JNI wrappers OFF
[default] [ARROW_GANDIVA_JAVA]
-- Include -static-libstdc++ -static-libgcc when linking with Gandiva static
libraries
OFF
[default] [ARROW_GANDIVA_STATIC_LIBSTDCPP]
-- Compiler flags to append when pre-compiling Gandiva operations ""
[default] [ARROW_GANDIVA_PC_CXX_FLAGS]
--
-- Advanced developer options:
-- Compile with extra error context (line numbers, code) OFF
[default] [ARROW_EXTRA_ERROR_CONTEXT]
-- If enabled install ONLY targets that have already been built. Please be
advised that if this is enabled 'install' will fail silently on components that
have not been built
OFF
[default] [ARROW_OPTIONAL_INSTALL]
-- Outputting build configuration summary to
/hello/arrow-master/cpp/release/cmake_summary.json
-- Configuring done
-- Generating done
-- Build files have been written to: /hello/arrow-master/cpp/release
root@66311c2b2dc5:/hello/arrow-master/cpp/release# make
Scanning dependencies of target jemalloc_ep
[ 0%] Creating directories for 'jemalloc_ep'
[ 1%] Performing download step (download, verify and extract) for 'jemalloc_ep'
-- jemalloc_ep download command succeeded. See also
/hello/arrow-master/cpp/release/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-download-*.log
[ 1%] Performing patch step for 'jemalloc_ep'
[ 2%] No update step for 'jemalloc_ep'
[ 3%] Performing configure step for 'jemalloc_ep'
-- jemalloc_ep configure command succeeded. See also
/hello/arrow-master/cpp/release/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-configure-*.log
[ 4%] Performing build step for 'jemalloc_ep'
-- jemalloc_ep build command succeeded. See also
/hello/arrow-master/cpp/release/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-build-*.log
[ 5%] Performing install step for 'jemalloc_ep'
-- jemalloc_ep install command succeeded. See also
/hello/arrow-master/cpp/release/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-install-*.log
[ 5%] Completed 'jemalloc_ep'
[ 5%] Built target jemalloc_ep
Scanning dependencies of target rapidjson_ep
[ 5%] Creating directories for 'rapidjson_ep'
[ 6%] Performing download step (download, verify and extract) for
'rapidjson_ep'
-- rapidjson_ep download command succeeded. See also
/hello/arrow-master/cpp/release/src/rapidjson_ep-stamp/rapidjson_ep-download-*.log
[ 6%] No patch step for 'rapidjson_ep'
[ 7%] No update step for 'rapidjson_ep'
[ 8%] Performing configure step for 'rapidjson_ep'
-- rapidjson_ep configure command succeeded. See also
/hello/arrow-master/cpp/release/src/rapidjson_ep-stamp/rapidjson_ep-configure-*.log
[ 9%] Performing build step for 'rapidjson_ep'
-- rapidjson_ep build command succeeded. See also
/hello/arrow-master/cpp/release/src/rapidjson_ep-stamp/rapidjson_ep-build-*.log
[ 10%] Performing install step for 'rapidjson_ep'
-- rapidjson_ep install command succeeded. See also
/hello/arrow-master/cpp/release/src/rapidjson_ep-stamp/rapidjson_ep-install-*.log
[ 10%] Completed 'rapidjson_ep'
[ 10%] Built target rapidjson_ep
Scanning dependencies of target toolchain
[ 10%] Built target toolchain
Scanning dependencies of target arrow_dependencies
[ 10%] Built target arrow_dependencies
Scanning dependencies of target arrow_objlib
[ 10%] Building CXX object src/arrow/CMakeFiles/arrow_objlib.dir/array.cc.o
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root@66311c2b2dc5:/hello/arrow-master/cpp/release# R
R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> install.packages('arrow')
Installing package into â/usr/local/lib/R/site-libraryâ
(as âlibâ is unspecified)
trying URL
'https://mran.microsoft.com/snapshot/2019-11-17/src/contrib/arrow_0.15.1.1.tar.gz'
Content type 'application/octet-stream' length 147277 bytes (143 KB)
==================================================
downloaded 143 KB
* installing *source* package âarrowâ ...
** package âarrowâ successfully unpacked and MD5 sums checked
** using staged installation
------------------------- NOTE ---------------------------
After installation, please run arrow::install_arrow()
for help installing required runtime libraries
---------------------------------------------------------
** libs
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c array.cpp -o array.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c array_from_vector.cpp -o array_from_vector.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c array_to_vector.cpp -o array_to_vector.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c arraydata.cpp -o arraydata.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c arrowExports.cpp -o arrowExports.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c buffer.cpp -o buffer.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c chunkedarray.cpp -o chunkedarray.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c compression.cpp -o compression.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c compute.cpp -o compute.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c csv.cpp -o csv.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c datatype.cpp -o datatype.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c feather.cpp -o feather.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c field.cpp -o field.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c filesystem.cpp -o filesystem.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c io.cpp -o io.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c json.cpp -o json.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c memorypool.cpp -o memorypool.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c message.cpp -o message.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c parquet.cpp -o parquet.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c recordbatch.cpp -o recordbatch.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c recordbatchreader.cpp -o recordbatchreader.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c recordbatchwriter.cpp -o recordbatchwriter.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c schema.cpp -o schema.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c symbols.cpp -o symbols.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c table.cpp -o table.o
g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c threadpool.cpp -o threadpool.o
g++ -std=gnu++11 -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o arrow.so
array.o array_from_vector.o array_to_vector.o arraydata.o arrowExports.o
buffer.o chunkedarray.o compression.o compute.o csv.o datatype.o feather.o
field.o filesystem.o io.o json.o memorypool.o message.o parquet.o recordbatch.o
recordbatchreader.o recordbatchwriter.o schema.o symbols.o table.o threadpool.o
-L/usr/local/lib/R/lib -lR
installing to /usr/local/lib/R/site-library/00LOCK-arrow/00new/arrow/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (arrow)
The downloaded source packages are in
â/tmp/RtmpFQeIkA/downloaded_packagesâ
> arrow::install_arrow()
See the Arrow C++ developer guide
<https://arrow.apache.org/docs/developers/cpp.html> for instructions on
building the library from source.
After you've installed the C++ library, you'll need to reinstall the R package
from source to find it.
Refer to the R package README
<https://github.com/apache/arrow/blob/master/r/README.md> for further details.
If you have other trouble, or if you think this message could be improved,
please report an issue here:
<https://issues.apache.org/jira/projects/ARROW/issues>
> options(arrow.use_threads=FALSE)
> r <- arrow::read_arrow('/hello/CLOPROCESS_TrancheHistory_Expense.arrow')
Error in io___ReadableFile__Open(clean_path_abs(path)) :
Cannot call io___ReadableFile__Open(). Please use arrow::install_arrow() to
install required runtime libraries.
> q()
root@66311c2b2dc5:/hello/arrow-master/cpp/release# ls
CMakeCache.txt cmake_install.cmake CTestTestfile.cmake Makefile release
tmp
CMakeFiles cmake_summary.json jemalloc_ep-prefix rapidjson_ep src
root@66311c2b2dc5:/hello/arrow-master/cpp/release# R
R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> arrow::arrow_available()
