Okay I ran it. With the additional tag the make install errored out. Here's the link to the log. Please let me know if you need further data.
https://gist.github.com/klarchristian/272d0a9bffa03d4ff2265e4e181a26ef Also one more point: The arrow-master folder is in a shared volume. I don't think that should be an issue but just wanted to point it out (first line in the log). -----Original Message----- From: Wes McKinney [mailto:wesmck...@gmail.com] Sent: Sunday, December 1, 2019 7:48 PM To: dev Cc: Anthony Abate; Jason De Biasio Subject: Re: Issues with installation on docker / R Can you also pass -DARROW_VERBOSE_THIRDPARTY_BUILD=ON ? That will show us what's wrong with with the Thrift build in this environment (I tried locally on my Ubuntu 18.04 machine -- without the influence of conda or any other library toolchains -- and it works fine). You can upload the whole logs on https://gist.github.com/ if you want On Sun, Dec 1, 2019 at 6:02 PM Christian Klar <ck...@tetragoninv.com> wrote: > > No luck with cmake -DARROW_PARQUET=ON either. Getting another error. Please > see below the log from the docker session. > > root@873cfc2bc7b1:/hello/arrow-master/cpp/release# cmake -DARROW_PARQUET=ON .. > -- Building using CMake version: 3.7.2 > -- The C compiler identification is GNU 6.3.0 > -- The CXX compiler identification is GNU 6.3.0 > -- Check for working C compiler: /usr/bin/cc > -- Check for working C compiler: /usr/bin/cc -- works > -- Detecting C compiler ABI info > -- Detecting C compiler ABI info - done > -- Detecting C compile features > -- Detecting C compile features - done > -- Check for working CXX compiler: /usr/bin/c++ > -- Check for working CXX compiler: /usr/bin/c++ -- works > -- Detecting CXX compiler ABI info > -- Detecting CXX compiler ABI info - done > -- Detecting CXX compile features > -- Detecting CXX compile features - done > -- Arrow version: 1.0.0 (full: '1.0.0-SNAPSHOT') > -- Arrow SO version: 100 (full: 100.0.0) > -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29") > -- clang-tidy not found > -- clang-format not found > -- infer not found > -- Found PythonInterp: /usr/bin/python (found version "2.7.13") > -- Found cpplint executable at > /hello/arrow-master/cpp/build-support/cpplint.py > -- Performing Test CXX_SUPPORTS_SSE4_2 > -- Performing Test CXX_SUPPORTS_SSE4_2 - Success > -- Performing Test CXX_SUPPORTS_ALTIVEC > -- Performing Test CXX_SUPPORTS_ALTIVEC - Failed > -- Performing Test CXX_SUPPORTS_ARMCRC > -- Performing Test CXX_SUPPORTS_ARMCRC - Failed > -- Performing Test CXX_SUPPORTS_ARMV8_CRC_CRYPTO > -- Performing Test CXX_SUPPORTS_ARMV8_CRC_CRYPTO - Failed > -- Arrow build warning level: PRODUCTION > Using ld linker > Configured for RELEASE build (set with cmake > -DCMAKE_BUILD_TYPE={release,debug,...}) > -- Build Type: RELEASE > -- Using AUTO approach to find dependencies > -- AWSSDK_VERSION: 1.7.160 > -- BOOST_VERSION: 1.67.0 > -- BROTLI_VERSION: v1.0.7 > -- BZIP2_VERSION: 1.0.8 > -- CARES_VERSION: 1.15.0 > -- GBENCHMARK_VERSION: v1.5.0 > -- GFLAGS_VERSION: v2.2.0 > -- GLOG_VERSION: v0.3.5 > -- GRPC_VERSION: v1.24.3 > -- GTEST_VERSION: 1.8.1 > -- JEMALLOC_VERSION: 5.2.1 > -- LZ4_VERSION: v1.9.2 > -- MIMALLOC_VERSION: 270e765454f98e8bab9d42609b153425f749fff6 > -- ORC_VERSION: 1.5.7 > -- PROTOBUF_VERSION: v3.7.1 > -- RAPIDJSON_VERSION: 2bbd33b33217ff4a73434ebf10cdac41e2ef5e34 > -- RE2_VERSION: 2019-08-01 > -- SNAPPY_VERSION: 1.1.7 > -- THRIFT_VERSION: 0.12.0 > -- THRIFT_MD5_CHECKSUM: 3deebbb4d1ca77dd9c9e009a1ea02183 > -- ZLIB_VERSION: 1.2.11 > -- ZSTD_VERSION: v1.4.3 > -- Looking for pthread.h > -- Looking for pthread.h - found > -- Looking for pthread_create > -- Looking for pthread_create - not found > -- Check if compiler accepts -pthread > -- Check if compiler accepts -pthread - yes > -- Found Threads: TRUE > -- Boost version: 1.62.0 > -- Found the following Boost libraries: > -- regex > -- system > -- filesystem > -- Boost include dir: /usr/include > -- Boost libraries: Boost::system;Boost::filesystem > -- Building without OpenSSL support. Minimum OpenSSL version 1.0.2 required. > -- Checking for module 'thrift' > -- No package 'thrift' found > -- Could NOT find Thrift (missing: THRIFT_STATIC_LIB THRIFT_INCLUDE_DIR > THRIFT_COMPILER) > Building Apache Thrift from source > /hello/arrow-master/cpp/build-support/get_apache_mirror.py:46: > RuntimeWarning: Failed loading > 'https://www.apache.org/dyn/closer.cgi?as_json=1': <urlopen error [SSL: > CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssl.c:661)> > RuntimeWarning) > Downloading Apache Thrift from > http://apache.osuosl.org//thrift/0.12.0/thrift-0.12.0.tar.gz > -- Building (vendored) jemalloc from source > -- Could NOT find RapidJSONAlt (missing: RAPIDJSON_INCLUDE_DIR) (found > suitable version "2bbd33b33217ff4a73434ebf10cdac41e2ef5e34", minimum required > is "1.1.0") > -- Building rapidjson from source > -- Found hdfs.h at: /hello/arrow-master/cpp/thirdparty/hadoop/include/hdfs.h > -- CMAKE_C_FLAGS: -O3 -DNDEBUG -Wall -msse4.2 > -- CMAKE_CXX_FLAGS: -Wno-noexcept-type -fdiagnostics-color=always -O3 > -DNDEBUG -Wall -msse4.2 > -- Looking for backtrace > -- Looking for backtrace - found > -- backtrace facility detected in default set of libraries > -- Found Backtrace: /usr/include > -- --------------------------------------------------------------------- > -- Arrow version: 1.0.0-SNAPSHOT > -- > -- Build configuration summary: > -- Generator: Unix Makefiles > -- Build type: RELEASE > -- Source directory: /hello/arrow-master/cpp > -- Install prefix: /usr/local > -- > -- Compile and link options: > -- Compiler flags to append when compiling Arrow > "" [default] [ARROW_CXXFLAGS] > -- Build static libraries > ON [default] [ARROW_BUILD_STATIC] > -- Build shared libraries > ON [default] [ARROW_BUILD_SHARED] > -- Exclude deprecated APIs from build > OFF [default] [ARROW_NO_DEPRECATED_API] > -- Use ccache when compiling (if available) > ON [default] [ARROW_USE_CCACHE] > -- Use ld.gold for linking on Linux (if available) > OFF [default] [ARROW_USE_LD_GOLD] > -- Build with SIMD optimizations > ON [default] [ARROW_USE_SIMD] > -- Build with SSE4.2 if compiler has support > ON [default] [ARROW_SSE42] > -- Build with Altivec if compiler has support > ON [default] [ARROW_ALTIVEC] > -- Build Arrow libraries with RATH set to $ORIGIN > OFF [default] [ARROW_RPATH_ORIGIN] > -- Build Arrow libraries with install_name set to @rpath > ON [default] [ARROW_INSTALL_NAME_RPATH] > -- Pass -ggdb flag to debug builds > ON [default] [ARROW_GGDB_DEBUG] > -- > -- Test and benchmark options: > -- Build the Arrow examples > OFF [default] [ARROW_BUILD_EXAMPLES] > -- Build the Arrow googletest unit tests > OFF [default] [ARROW_BUILD_TESTS] > -- Build the Arrow integration test executables > OFF [default] [ARROW_BUILD_INTEGRATION] > -- Build the Arrow micro benchmarks > OFF [default] [ARROW_BUILD_BENCHMARKS] > -- Build the Arrow micro reference benchmarks > OFF [default] [ARROW_BUILD_BENCHMARKS_REFERENCE] > -- Linkage of Arrow libraries with unit tests executables. > "shared" [default] [ARROW_TEST_LINKAGE] [shared|static] > -- Build Arrow Fuzzing executables > OFF [default] [ARROW_FUZZING] > -- Enable unit tests which use large memory > OFF [default] [ARROW_LARGE_MEMORY_TESTS] > -- > -- Lint options: > -- Only define the lint and check-format targets > OFF [default] [ARROW_ONLY_LINT] > -- If off, 'quiet' flags will be passed to linting tools > OFF [default] [ARROW_VERBOSE_LINT] > -- Build with C++ code coverage enabled > OFF [default] [ARROW_GENERATE_COVERAGE] > -- > -- Checks options: > -- Run the test suite using valgrind --tool=memcheck > OFF [default] [ARROW_TEST_MEMCHECK] > -- Enable Address Sanitizer checks > OFF [default] [ARROW_USE_ASAN] > -- Enable Thread Sanitizer checks > OFF [default] [ARROW_USE_TSAN] > -- Enable Undefined Behavior sanitizer checks > OFF [default] [ARROW_USE_UBSAN] > -- > -- Project component options: > -- Build Arrow commandline utilities > OFF [default] [ARROW_BUILD_UTILITIES] > -- Build the Arrow Compute Modules > ON [default] [ARROW_COMPUTE] > -- Build the Arrow CUDA extensions (requires CUDA toolkit) > OFF [default] [ARROW_CUDA] > -- Build the Arrow Dataset Modules > ON [default] [ARROW_DATASET] > -- Build the Arrow Filesystem Layer > ON [default] [ARROW_FILESYSTEM] > -- Build the Arrow Flight RPC System (requires GRPC, Protocol Buffers) > OFF [default] [ARROW_FLIGHT] > -- Build the Gandiva libraries > OFF [default] [ARROW_GANDIVA] > -- Build the Arrow HDFS bridge > ON [default] [ARROW_HDFS] > -- Build the HiveServer2 client and Arrow adapter > OFF [default] [ARROW_HIVESERVER2] > -- Build the Arrow IPC extensions > ON [default] [ARROW_IPC] > -- Build the Arrow jemalloc-based allocator > ON [default] [ARROW_JEMALLOC] > -- Build the Arrow JNI lib > OFF [default] [ARROW_JNI] > -- Build Arrow with JSON support (requires RapidJSON) > ON [default] [ARROW_JSON] > -- Build the Arrow mimalloc-based allocator > OFF [default] [ARROW_MIMALLOC] > -- Build the Parquet libraries > ON [ARROW_PARQUET] > -- Build the Arrow ORC adapter > OFF [default] [ARROW_ORC] > -- Build the plasma object store along with Arrow > OFF [default] [ARROW_PLASMA] > -- Build the plasma object store java client > OFF [default] [ARROW_PLASMA_JAVA_CLIENT] > -- Build the Arrow CPython extensions > OFF [default] [ARROW_PYTHON] > -- Build Arrow with S3 support (requires the AWS SDK for C++) > OFF [default] [ARROW_S3] > -- Build Arrow with TensorFlow support enabled > OFF [default] [ARROW_TENSORFLOW] > -- > -- Thirdparty toolchain options: > -- Method to use for acquiring arrow's build dependencies > "AUTO" [default] [ARROW_DEPENDENCY_SOURCE] [AUTO|BUNDLED|SYSTEM|CONDA|BREW] > -- Show output from ExternalProjects rather than just logging to files > OFF [default] [ARROW_VERBOSE_THIRDPARTY_BUILD] > -- Rely on boost shared libraries where relevant > ON [default] [ARROW_BOOST_USE_SHARED] > -- Rely on Protocol Buffers shared libraries where relevant > ON [default] [ARROW_PROTOBUF_USE_SHARED] > -- Rely on GFlags shared libraries where relevant > ON [default] [ARROW_GFLAGS_USE_SHARED] > -- Build with backtrace support > ON [default] [ARROW_WITH_BACKTRACE] > -- Build libraries with glog support for pluggable logging > OFF [default] [ARROW_USE_GLOG] > -- Build with Brotli compression > OFF [default] [ARROW_WITH_BROTLI] > -- Build with BZ2 compression > OFF [default] [ARROW_WITH_BZ2] > -- Build with lz4 compression > OFF [default] [ARROW_WITH_LZ4] > -- Build with Snappy compression > OFF [default] [ARROW_WITH_SNAPPY] > -- Build with zlib compression > OFF [default] [ARROW_WITH_ZLIB] > -- Build with zstd compression > OFF [default] [ARROW_WITH_ZSTD] > -- > -- Parquet options: > -- Depend only on Thirdparty headers to build libparquet. Always OFF if > building binaries > > OFF [default] [PARQUET_MINIMAL_DEPENDENCY] > -- Build the Parquet executable CLI tools. Requires static libraries to be > built. > > OFF [default] [PARQUET_BUILD_EXECUTABLES] > -- Build the Parquet examples. Requires static libraries to be built. > OFF [default] [PARQUET_BUILD_EXAMPLES] > -- Build support for encryption. Fail if OpenSSL is not found > OFF [default] [PARQUET_REQUIRE_ENCRYPTION] > -- > -- Gandiva options: > -- Build the Gandiva JNI wrappers > OFF [default] [ARROW_GANDIVA_JAVA] > -- Include -static-libstdc++ -static-libgcc when linking with Gandiva > static libraries > > OFF [default] [ARROW_GANDIVA_STATIC_LIBSTDCPP] > -- Compiler flags to append when pre-compiling Gandiva operations > "" [default] [ARROW_GANDIVA_PC_CXX_FLAGS] > -- > -- Advanced developer options: > -- Compile with extra error context (line numbers, code) > OFF [default] [ARROW_EXTRA_ERROR_CONTEXT] > -- If enabled install ONLY targets that have already been built. Please be > advised that if this is enabled 'install' will fail silently on components > that have not been built > > OFF [default] [ARROW_OPTIONAL_INSTALL] > -- Outputting build configuration summary to > /hello/arrow-master/cpp/release/cmake_summary.json > -- Configuring done > -- Generating done > -- Build files have been written to: /hello/arrow-master/cpp/release > root@873cfc2bc7b1:/hello/arrow-master/cpp/release# make install > Scanning dependencies of target jemalloc_ep > [ 0%] Creating directories for 'jemalloc_ep' > [ 1%] Performing download step (download, verify and extract) for > 'jemalloc_ep' > -- jemalloc_ep download command succeeded. See also > /hello/arrow-master/cpp/release/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-download-*.log > [ 2%] Performing patch step for 'jemalloc_ep' > [ 2%] No update step for 'jemalloc_ep' > [ 2%] Performing configure step for 'jemalloc_ep' > -- jemalloc_ep configure command succeeded. See also > /hello/arrow-master/cpp/release/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-configure-*.log > [ 3%] Performing build step for 'jemalloc_ep' > -- jemalloc_ep build command succeeded. See also > /hello/arrow-master/cpp/release/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-build-*.log > [ 4%] Performing install step for 'jemalloc_ep' > -- jemalloc_ep install command succeeded. See also > /hello/arrow-master/cpp/release/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-install-*.log > [ 4%] Completed 'jemalloc_ep' > [ 4%] Built target jemalloc_ep > Scanning dependencies of target thrift_ep > [ 4%] Creating directories for 'thrift_ep' > [ 5%] Performing download step (download, verify and extract) for 'thrift_ep' > -- thrift_ep download command succeeded. See also > /hello/arrow-master/cpp/release/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-download-*.log > [ 6%] No patch step for 'thrift_ep' > [ 6%] No update step for 'thrift_ep' > [ 6%] Performing configure step for 'thrift_ep' > CMake Error at > /hello/arrow-master/cpp/release/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-configure-RELEASE.cmake:16 > (message): > Command failed: 1 > > '/usr/bin/cmake' '-DZLIB_LIBRARY=' '-DCMAKE_C_COMPILER=/usr/bin/cc' > '-DCMAKE_CXX_COMPILER=/usr/bin/c++' '-DCMAKE_AR=/usr/bin/ar' > '-DCMAKE_RANLIB=/usr/bin/ranlib' '-DCMAKE_BUILD_TYPE=RELEASE' > '-DCMAKE_C_FLAGS= -O3 -DNDEBUG -O3 -DNDEBUG -fPIC' '-DCMAKE_C_FLAGS_RELEASE= > -O3 -DNDEBUG -O3 -DNDEBUG -fPIC' '-DCMAKE_CXX_FLAGS= > -fdiagnostics-color=always -O3 -DNDEBUG -O3 -DNDEBUG -fPIC' > '-DCMAKE_CXX_FLAGS_RELEASE= -fdiagnostics-color=always -O3 -DNDEBUG -O3 > -DNDEBUG -fPIC' > '-DCMAKE_INSTALL_PREFIX=/hello/arrow-master/cpp/release/thrift_ep/src/thrift_ep-install' > > '-DCMAKE_INSTALL_RPATH=/hello/arrow-master/cpp/release/thrift_ep/src/thrift_ep-install/lib' > '-DBUILD_SHARED_LIBS=OFF' '-DBUILD_TESTING=OFF' '-DBUILD_EXAMPLES=OFF' > '-DBUILD_TUTORIALS=OFF' '-DWITH_QT4=OFF' '-DWITH_C_GLIB=OFF' > '-DWITH_JAVA=OFF' '-DWITH_PYTHON=OFF' '-DWITH_HASKELL=OFF' '-DWITH_CPP=ON' > '-DWITH_STATIC_LIB=ON' '-DWITH_LIBEVENT=OFF' '-DBoost_NO_BOOST_CMAKE=ON' > '-DBoost_NAMESPACE=boost' '-GUnix Makefiles' > '/hello/arrow-master/cpp/release/thrift_ep-prefix/src/thrift_ep' > See also > > /hello/arrow-master/cpp/release/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-configure-*.log > > CMakeFiles/thrift_ep.dir/build.make:106: recipe for target > 'thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-configure' failed > make[2]: *** [thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-configure] Error > 1 > CMakeFiles/Makefile2:168: recipe for target 'CMakeFiles/thrift_ep.dir/all' > failed > make[1]: *** [CMakeFiles/thrift_ep.dir/all] Error 2 > Makefile:138: recipe for target 'all' failed > make: *** [all] Error 2 > root@873cfc2bc7b1:/hello/arrow-master/cpp/release# > > > > > > > > -----Original Message----- > From: Christian Klar > Sent: Sunday, December 1, 2019 6:55 PM > To: dev@arrow.apache.org > Cc: Anthony Abate; Jason De Biasio > Subject: RE: Issues with installation on docker / R > > Thanks! > > When running "make install" it finishes fine too, but then the R installation > errors out. See below. > > Are there any other libraries I need to install? > > (Would potentially "cmake -DARROW_PARQUET=ON" solve this?) > > ############ > > Here the log. > > > install.packages('arrow') > Installing package into ‘/usr/local/lib/R/site-library’ > (as ‘lib’ is unspecified) > trying URL > 'https://mran.microsoft.com/snapshot/2019-11-17/src/contrib/arrow_0.15.1.1.tar.gz' > Content type 'application/octet-stream' length 147277 bytes (143 KB) > ================================================== > downloaded 143 KB > > * installing *source* package ‘arrow’ ... > ** package ‘arrow’ successfully unpacked and MD5 sums checked > ** using staged installation > PKG_CFLAGS= -DARROW_R_WITH_ARROW > PKG_LIBS=-larrow -lparquet > ** libs > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -DARROW_R_WITH_ARROW > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time > -D_FORTIFY_SOURCE=2 -g -c array.cpp -o array.o > In file included from array.cpp:18:0: > ./arrow_types.h:198:34: fatal error: parquet/arrow/reader.h: No such file or > directory > #include <parquet/arrow/reader.h> > ^ > compilation terminated. > /usr/local/lib/R/etc/Makeconf:176: recipe for target 'array.o' failed > make: *** [array.o] Error 1 > ERROR: compilation failed for package ‘arrow’ > * removing ‘/usr/local/lib/R/site-library/arrow’ > * restoring previous ‘/usr/local/lib/R/site-library/arrow’ > > The downloaded source packages are in > ‘/tmp/Rtmp2POLjt/downloaded_packages’ > Warning message: > In install.packages("arrow") : > installation of package ‘arrow’ had non-zero exit status > > ############ > > Here the docker image again. > > FROM rocker/tidyverse > MAINTAINER Christian Klar <ck...@tetragoninv.com> > ENV DEBIAN_FRONTEND noninteractive > RUN apt-get install -y -V \ > build-essential \ > cmake \ > libboost-filesystem-dev \ > libboost-regex-dev \ > libboost-system-dev > RUN apt update && \ > apt install -y -V \ > autoconf-archive \ > gtk-doc-tools \ > libgirepository1.0-dev \ > libglib2.0-doc \ > libtool \ > pkg-config && \ > apt clean && \ > rm -rf /var/lib/apt/lists/* > RUN R -e "install.packages('remotes', repos = c(CRAN = > 'http://cran.us.r-project.org'))" > > > > > > > > > > > > > > > > > > > -----Original Message----- > From: Wes McKinney [mailto:wesmck...@gmail.com] > Sent: Sunday, December 1, 2019 6:34 PM > To: dev@arrow.apache.org > Cc: Anthony Abate; Jason De Biasio > Subject: Re: Issues with installation on docker / R > > That is a “minimal release build” but it does not install the results. Try > “make install” instead of just “make”. We can improve the documentation to > clarify this issue > > On Sun, Dec 1, 2019 at 5:22 PM Christian Klar <ck...@tetragoninv.com> wrote: > > > > > Thanks for the quick response! > > > > I attached the log to my first email but maybe it didn't got through > > because of the mailing list. Copying it below below the > > "#############"-line. > > > > I'm using the commands from the "Minimal release build" on > > https://arrow.apache.org/docs/developers/cpp.html. > > > > cd arrow/cpp > > mkdir release > > cd release > > cmake .. > > make > > > > The corresponding line below for the last make is here copied separately. > > > > "root@66311c2b2dc5:/hello/arrow-master/cpp/release# make" > > > > Please let me know if that's not the one you meant. > > > > ############# > > > > cklar@nyc-poly-tci-03:~/Desktop/Docker/arrow$ docker run -v > > /home/cklar/Desktop/tmpshare:/hello -it arrowtest /bin/bash > > root@66311c2b2dc5:/# cd hello > > root@66311c2b2dc5:/hello# cd hell^C > > root@66311c2b2dc5:/hello# ls > > arrow-master arrow-master.zip CLOPROCESS_TrancheHistory_Expense.arrow > > root@66311c2b2dc5:/hello# cd arrow-master > > root@66311c2b2dc5:/hello/arrow-master# ls > > appveyor.yml cmake-format.py csharp format java > > matlab README.md testing > > c_glib CODE_OF_CONDUCT.md dev go js > > NOTICE.txt ruby > > CHANGELOG.md CONTRIBUTING.md docker-compose.yml header > > LICENSE.txt python run-cmake-format.py > > ci cpp docs integration > > Makefile.docker r rust > > root@66311c2b2dc5:/hello/arrow-master# cd cpp > > root@66311c2b2dc5:/hello/arrow-master/cpp# mkdir release > > root@66311c2b2dc5:/hello/arrow-master/cpp# cd release > > root@66311c2b2dc5:/hello/arrow-master/cpp/release# cmake > > Usage > > > > cmake [options] <path-to-source> > > cmake [options] <path-to-existing-build> > > > > Specify a source directory to (re-)generate a build system for it in the > > current working directory. Specify an existing build directory to > > re-generate its build system. > > > > Run 'cmake --help' for more information. > > > > root@66311c2b2dc5:/hello/arrow-master/cpp/release# cmake .. > > -- Building using CMake version: 3.7.2 > > -- The C compiler identification is GNU 6.3.0 > > -- The CXX compiler identification is GNU 6.3.0 > > -- Check for working C compiler: /usr/bin/cc > > -- Check for working C compiler: /usr/bin/cc -- works > > -- Detecting C compiler ABI info > > -- Detecting C compiler ABI info - done > > -- Detecting C compile features > > -- Detecting C compile features - done > > -- Check for working CXX compiler: /usr/bin/c++ > > -- Check for working CXX compiler: /usr/bin/c++ -- works > > -- Detecting CXX compiler ABI info > > -- Detecting CXX compiler ABI info - done > > -- Detecting CXX compile features > > -- Detecting CXX compile features - done > > -- Arrow version: 1.0.0 (full: '1.0.0-SNAPSHOT') > > -- Arrow SO version: 100 (full: 100.0.0) > > -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29") > > -- clang-tidy not found > > -- clang-format not found > > -- infer not found > > -- Found PythonInterp: /usr/bin/python (found version "2.7.13") > > -- Found cpplint executable at > > /hello/arrow-master/cpp/build-support/cpplint.py > > -- Performing Test CXX_SUPPORTS_SSE4_2 > > -- Performing Test CXX_SUPPORTS_SSE4_2 - Success > > -- Performing Test CXX_SUPPORTS_ALTIVEC > > -- Performing Test CXX_SUPPORTS_ALTIVEC - Failed > > -- Performing Test CXX_SUPPORTS_ARMCRC > > -- Performing Test CXX_SUPPORTS_ARMCRC - Failed > > -- Performing Test CXX_SUPPORTS_ARMV8_CRC_CRYPTO > > -- Performing Test CXX_SUPPORTS_ARMV8_CRC_CRYPTO - Failed > > -- Arrow build warning level: PRODUCTION > > Using ld linker > > Configured for RELEASE build (set with cmake > > -DCMAKE_BUILD_TYPE={release,debug,...}) > > -- Build Type: RELEASE > > -- Using AUTO approach to find dependencies > > -- AWSSDK_VERSION: 1.7.160 > > -- BOOST_VERSION: 1.67.0 > > -- BROTLI_VERSION: v1.0.7 > > -- BZIP2_VERSION: 1.0.8 > > -- CARES_VERSION: 1.15.0 > > -- GBENCHMARK_VERSION: v1.5.0 > > -- GFLAGS_VERSION: v2.2.0 > > -- GLOG_VERSION: v0.3.5 > > -- GRPC_VERSION: v1.24.3 > > -- GTEST_VERSION: 1.8.1 > > -- JEMALLOC_VERSION: 5.2.1 > > -- LZ4_VERSION: v1.9.2 > > -- MIMALLOC_VERSION: 270e765454f98e8bab9d42609b153425f749fff6 > > -- ORC_VERSION: 1.5.7 > > -- PROTOBUF_VERSION: v3.7.1 > > -- RAPIDJSON_VERSION: 2bbd33b33217ff4a73434ebf10cdac41e2ef5e34 > > -- RE2_VERSION: 2019-08-01 > > -- SNAPPY_VERSION: 1.1.7 > > -- THRIFT_VERSION: 0.12.0 > > -- THRIFT_MD5_CHECKSUM: 3deebbb4d1ca77dd9c9e009a1ea02183 > > -- ZLIB_VERSION: 1.2.11 > > -- ZSTD_VERSION: v1.4.3 > > -- Looking for pthread.h > > -- Looking for pthread.h - found > > -- Looking for pthread_create > > -- Looking for pthread_create - not found > > -- Check if compiler accepts -pthread > > -- Check if compiler accepts -pthread - yes > > -- Found Threads: TRUE > > -- Boost version: 1.62.0 > > -- Found the following Boost libraries: > > -- regex > > -- system > > -- filesystem > > -- Boost include dir: /usr/include > > -- Boost libraries: Boost::system;Boost::filesystem > > -- Building without OpenSSL support. Minimum OpenSSL version 1.0.2 > > required. > > -- Building (vendored) jemalloc from source > > -- Could NOT find RapidJSONAlt (missing: RAPIDJSON_INCLUDE_DIR) (found > > suitable version "2bbd33b33217ff4a73434ebf10cdac41e2ef5e34", minimum > > required is "1.1.0") > > -- Building rapidjson from source > > -- Found hdfs.h at: > > /hello/arrow-master/cpp/thirdparty/hadoop/include/hdfs.h > > -- CMAKE_C_FLAGS: -O3 -DNDEBUG -Wall -msse4.2 > > -- CMAKE_CXX_FLAGS: -Wno-noexcept-type -fdiagnostics-color=always -O3 > > -DNDEBUG -Wall -msse4.2 > > -- Looking for backtrace > > -- Looking for backtrace - found > > -- backtrace facility detected in default set of libraries > > -- Found Backtrace: /usr/include > > -- --------------------------------------------------------------------- > > -- Arrow version: 1.0.0-SNAPSHOT > > -- > > -- Build configuration summary: > > -- Generator: Unix Makefiles > > -- Build type: RELEASE > > -- Source directory: /hello/arrow-master/cpp > > -- Install prefix: /usr/local > > -- > > -- Compile and link options: > > -- Compiler flags to append when compiling Arrow > > "" [default] [ARROW_CXXFLAGS] > > -- Build static libraries > > ON [default] [ARROW_BUILD_STATIC] > > -- Build shared libraries > > ON [default] [ARROW_BUILD_SHARED] > > -- Exclude deprecated APIs from build > > OFF [default] [ARROW_NO_DEPRECATED_API] > > -- Use ccache when compiling (if available) > > ON [default] [ARROW_USE_CCACHE] > > -- Use ld.gold for linking on Linux (if available) > > OFF [default] [ARROW_USE_LD_GOLD] > > -- Build with SIMD optimizations > > ON [default] [ARROW_USE_SIMD] > > -- Build with SSE4.2 if compiler has support > > ON [default] [ARROW_SSE42] > > -- Build with Altivec if compiler has support > > ON [default] [ARROW_ALTIVEC] > > -- Build Arrow libraries with RATH set to $ORIGIN > > OFF [default] [ARROW_RPATH_ORIGIN] > > -- Build Arrow libraries with install_name set to @rpath > > ON [default] [ARROW_INSTALL_NAME_RPATH] > > -- Pass -ggdb flag to debug builds > > ON [default] [ARROW_GGDB_DEBUG] > > -- > > -- Test and benchmark options: > > -- Build the Arrow examples > > OFF [default] [ARROW_BUILD_EXAMPLES] > > -- Build the Arrow googletest unit tests > > OFF [default] [ARROW_BUILD_TESTS] > > -- Build the Arrow integration test executables > > OFF [default] [ARROW_BUILD_INTEGRATION] > > -- Build the Arrow micro benchmarks > > OFF [default] [ARROW_BUILD_BENCHMARKS] > > -- Build the Arrow micro reference benchmarks > > OFF [default] [ARROW_BUILD_BENCHMARKS_REFERENCE] > > -- Linkage of Arrow libraries with unit tests executables. > > "shared" [default] [ARROW_TEST_LINKAGE] [shared|static] > > -- Build Arrow Fuzzing executables > > OFF [default] [ARROW_FUZZING] > > -- Enable unit tests which use large memory > > OFF [default] [ARROW_LARGE_MEMORY_TESTS] > > -- > > -- Lint options: > > -- Only define the lint and check-format targets > > OFF [default] [ARROW_ONLY_LINT] > > -- If off, 'quiet' flags will be passed to linting tools > > OFF [default] [ARROW_VERBOSE_LINT] > > -- Build with C++ code coverage enabled > > OFF [default] [ARROW_GENERATE_COVERAGE] > > -- > > -- Checks options: > > -- Run the test suite using valgrind --tool=memcheck > > OFF [default] [ARROW_TEST_MEMCHECK] > > -- Enable Address Sanitizer checks > > OFF [default] [ARROW_USE_ASAN] > > -- Enable Thread Sanitizer checks > > OFF [default] [ARROW_USE_TSAN] > > -- Enable Undefined Behavior sanitizer checks > > OFF [default] [ARROW_USE_UBSAN] > > -- > > -- Project component options: > > -- Build Arrow commandline utilities > > OFF [default] [ARROW_BUILD_UTILITIES] > > -- Build the Arrow Compute Modules > > ON [default] [ARROW_COMPUTE] > > -- Build the Arrow CUDA extensions (requires CUDA toolkit) > > OFF [default] [ARROW_CUDA] > > -- Build the Arrow Dataset Modules > > ON [default] [ARROW_DATASET] > > -- Build the Arrow Filesystem Layer > > ON [default] [ARROW_FILESYSTEM] > > -- Build the Arrow Flight RPC System (requires GRPC, Protocol Buffers) > > OFF [default] [ARROW_FLIGHT] > > -- Build the Gandiva libraries > > OFF [default] [ARROW_GANDIVA] > > -- Build the Arrow HDFS bridge > > ON [default] [ARROW_HDFS] > > -- Build the HiveServer2 client and Arrow adapter > > OFF [default] [ARROW_HIVESERVER2] > > -- Build the Arrow IPC extensions > > ON [default] [ARROW_IPC] > > -- Build the Arrow jemalloc-based allocator > > ON [default] [ARROW_JEMALLOC] > > -- Build the Arrow JNI lib > > OFF [default] [ARROW_JNI] > > -- Build Arrow with JSON support (requires RapidJSON) > > ON [default] [ARROW_JSON] > > -- Build the Arrow mimalloc-based allocator > > OFF [default] [ARROW_MIMALLOC] > > -- Build the Parquet libraries > > OFF [default] [ARROW_PARQUET] > > -- Build the Arrow ORC adapter > > OFF [default] [ARROW_ORC] > > -- Build the plasma object store along with Arrow > > OFF [default] [ARROW_PLASMA] > > -- Build the plasma object store java client > > OFF [default] [ARROW_PLASMA_JAVA_CLIENT] > > -- Build the Arrow CPython extensions > > OFF [default] [ARROW_PYTHON] > > -- Build Arrow with S3 support (requires the AWS SDK for C++) > > OFF [default] [ARROW_S3] > > -- Build Arrow with TensorFlow support enabled > > OFF [default] [ARROW_TENSORFLOW] > > -- > > -- Thirdparty toolchain options: > > -- Method to use for acquiring arrow's build dependencies > > "AUTO" [default] [ARROW_DEPENDENCY_SOURCE] [AUTO|BUNDLED|SYSTEM|CONDA|BREW] > > -- Show output from ExternalProjects rather than just logging to files > > OFF [default] [ARROW_VERBOSE_THIRDPARTY_BUILD] > > -- Rely on boost shared libraries where relevant > > ON [default] [ARROW_BOOST_USE_SHARED] > > -- Rely on Protocol Buffers shared libraries where relevant > > ON [default] [ARROW_PROTOBUF_USE_SHARED] > > -- Rely on GFlags shared libraries where relevant > > ON [default] [ARROW_GFLAGS_USE_SHARED] > > -- Build with backtrace support > > ON [default] [ARROW_WITH_BACKTRACE] > > -- Build libraries with glog support for pluggable logging > > OFF [default] [ARROW_USE_GLOG] > > -- Build with Brotli compression > > OFF [default] [ARROW_WITH_BROTLI] > > -- Build with BZ2 compression > > OFF [default] [ARROW_WITH_BZ2] > > -- Build with lz4 compression > > OFF [default] [ARROW_WITH_LZ4] > > -- Build with Snappy compression > > OFF [default] [ARROW_WITH_SNAPPY] > > -- Build with zlib compression > > OFF [default] [ARROW_WITH_ZLIB] > > -- Build with zstd compression > > OFF [default] [ARROW_WITH_ZSTD] > > -- > > -- Parquet options: > > -- Depend only on Thirdparty headers to build libparquet. Always OFF if > > building binaries > > > > OFF [default] [PARQUET_MINIMAL_DEPENDENCY] > > -- Build the Parquet executable CLI tools. Requires static libraries to > > be built. > > > > OFF [default] [PARQUET_BUILD_EXECUTABLES] > > -- Build the Parquet examples. Requires static libraries to be built. > > OFF [default] [PARQUET_BUILD_EXAMPLES] > > -- Build support for encryption. Fail if OpenSSL is not found > > OFF [default] [PARQUET_REQUIRE_ENCRYPTION] > > -- > > -- Gandiva options: > > -- Build the Gandiva JNI wrappers > > OFF [default] [ARROW_GANDIVA_JAVA] > > -- Include -static-libstdc++ -static-libgcc when linking with Gandiva > > static libraries > > > > OFF [default] [ARROW_GANDIVA_STATIC_LIBSTDCPP] > > -- Compiler flags to append when pre-compiling Gandiva operations > > "" [default] [ARROW_GANDIVA_PC_CXX_FLAGS] > > -- > > -- Advanced developer options: > > -- Compile with extra error context (line numbers, code) > > OFF [default] [ARROW_EXTRA_ERROR_CONTEXT] > > -- If enabled install ONLY targets that have already been built. Please > > be advised that if this is enabled 'install' will fail silently on > > components that have not been built > > > > OFF [default] [ARROW_OPTIONAL_INSTALL] > > -- Outputting build configuration summary to > > /hello/arrow-master/cpp/release/cmake_summary.json > > -- Configuring done > > -- Generating done > > -- Build files have been written to: /hello/arrow-master/cpp/release > > root@66311c2b2dc5:/hello/arrow-master/cpp/release# make > > Scanning dependencies of target jemalloc_ep > > [ 0%] Creating directories for 'jemalloc_ep' > > [ 1%] Performing download step (download, verify and extract) for > > 'jemalloc_ep' > > -- jemalloc_ep download command succeeded. See also > > /hello/arrow-master/cpp/release/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-download-*.log > > [ 1%] Performing patch step for 'jemalloc_ep' > > [ 2%] No update step for 'jemalloc_ep' > > [ 3%] Performing configure step for 'jemalloc_ep' > > -- jemalloc_ep configure command succeeded. See also > > /hello/arrow-master/cpp/release/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-configure-*.log > > [ 4%] Performing build step for 'jemalloc_ep' > > -- jemalloc_ep build command succeeded. See also > > /hello/arrow-master/cpp/release/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-build-*.log > > [ 5%] Performing install step for 'jemalloc_ep' > > -- jemalloc_ep install command succeeded. See also > > /hello/arrow-master/cpp/release/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-install-*.log > > [ 5%] Completed 'jemalloc_ep' > > [ 5%] Built target jemalloc_ep > > Scanning dependencies of target rapidjson_ep > > [ 5%] Creating directories for 'rapidjson_ep' > > [ 6%] Performing download step (download, verify and extract) for > > 'rapidjson_ep' > > -- rapidjson_ep download command succeeded. See also > > /hello/arrow-master/cpp/release/src/rapidjson_ep-stamp/rapidjson_ep-download-*.log > > [ 6%] No patch step for 'rapidjson_ep' > > [ 7%] No update step for 'rapidjson_ep' > > [ 8%] Performing configure step for 'rapidjson_ep' > > -- rapidjson_ep configure command succeeded. See also > > /hello/arrow-master/cpp/release/src/rapidjson_ep-stamp/rapidjson_ep-configure-*.log > > [ 9%] Performing build step for 'rapidjson_ep' > > -- rapidjson_ep build command succeeded. See also > > /hello/arrow-master/cpp/release/src/rapidjson_ep-stamp/rapidjson_ep-build-*.log > > [ 10%] Performing install step for 'rapidjson_ep' > > -- rapidjson_ep install command succeeded. See also > > /hello/arrow-master/cpp/release/src/rapidjson_ep-stamp/rapidjson_ep-install-*.log > > [ 10%] Completed 'rapidjson_ep' > > [ 10%] Built target rapidjson_ep > > Scanning dependencies of target toolchain > > [ 10%] Built target toolchain > > Scanning dependencies of target arrow_dependencies > > [ 10%] Built target arrow_dependencies > > Scanning dependencies of target arrow_objlib > > [ 10%] Building CXX object src/arrow/CMakeFiles/arrow_objlib.dir/array.cc.o > > [ 11%] Building CXX object > > src/arrow/CMakeFiles/arrow_objlib.dir/builder.cc.o > > [ 11%] Building CXX object > > src/arrow/CMakeFiles/arrow_objlib.dir/array/builder_adaptive.cc.o > > [ 12%] Building CXX object > > src/arrow/CMakeFiles/arrow_objlib.dir/array/builder_base.cc.o > > [ 13%] Building CXX object > > src/arrow/CMakeFiles/arrow_objlib.dir/array/builder_binary.cc.o > > [ 13%] Building CXX object > > src/arrow/CMakeFiles/arrow_objlib.dir/array/builder_decimal.cc.o > > [ 14%] Building CXX object > > 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> > [ 91%] Building CXX object > > src/arrow/CMakeFiles/arrow_objlib.dir/json/chunked_builder.cc.o > > [ 91%] Building CXX object > > src/arrow/CMakeFiles/arrow_objlib.dir/json/chunker.cc.o > > [ 92%] Building CXX object > > src/arrow/CMakeFiles/arrow_objlib.dir/json/converter.cc.o > > [ 93%] Building CXX object > > src/arrow/CMakeFiles/arrow_objlib.dir/json/parser.cc.o > > [ 93%] Building CXX object > > src/arrow/CMakeFiles/arrow_objlib.dir/json/reader.cc.o > > [ 93%] Built target arrow_objlib > > Scanning dependencies of target arrow_shared > > [ 94%] Linking CXX shared library ../../release/libarrow.so > > [ 94%] Built target arrow_shared > > Scanning dependencies of target arrow_static > > [ 95%] Linking CXX static library ../../release/libarrow.a > > [ 95%] Built target arrow_static > > Scanning dependencies of target arrow_dataset_objlib > > [ 95%] Building CXX object > > src/arrow/dataset/CMakeFiles/arrow_dataset_objlib.dir/dataset.cc.o > > [ 96%] Building CXX object > > 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Copyright (C) 2019 The R Foundation for Statistical Computing > > Platform: x86_64-pc-linux-gnu (64-bit) > > > > R is free software and comes with ABSOLUTELY NO WARRANTY. > > You are welcome to redistribute it under certain conditions. > > Type 'license()' or 'licence()' for distribution details. > > > > R is a collaborative project with many contributors. > > Type 'contributors()' for more information and > > 'citation()' on how to cite R or R packages in publications. > > > > Type 'demo()' for some demos, 'help()' for on-line help, or > > 'help.start()' for an HTML browser interface to help. > > Type 'q()' to quit R. > > > > > install.packages('arrow') > > Installing package into ‘/usr/local/lib/R/site-library’ > > (as ‘lib’ is unspecified) > > trying URL ' > > https://mran.microsoft.com/snapshot/2019-11-17/src/contrib/arrow_0.15.1.1.tar.gz > > ' > > Content type 'application/octet-stream' length 147277 bytes (143 KB) > > ================================================== > > downloaded 143 KB > > > > * installing *source* package ‘arrow’ ... > > ** package ‘arrow’ successfully unpacked and MD5 sums checked > > ** using staged installation > > ------------------------- NOTE --------------------------- > > After installation, please run arrow::install_arrow() > > for help installing required runtime libraries > > --------------------------------------------------------- > > ** libs > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c array.cpp -o array.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c array_from_vector.cpp -o > > array_from_vector.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c array_to_vector.cpp -o > > array_to_vector.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c arraydata.cpp -o arraydata.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c arrowExports.cpp -o arrowExports.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c buffer.cpp -o buffer.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chunkedarray.cpp -o chunkedarray.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c compression.cpp -o compression.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c compute.cpp -o compute.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c csv.cpp -o csv.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c datatype.cpp -o datatype.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c feather.cpp -o feather.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c field.cpp -o field.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c filesystem.cpp -o filesystem.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io.cpp -o io.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c json.cpp -o json.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c memorypool.cpp -o memorypool.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c message.cpp -o message.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parquet.cpp -o parquet.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c recordbatch.cpp -o recordbatch.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c recordbatchreader.cpp -o > > recordbatchreader.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c recordbatchwriter.cpp -o > > recordbatchwriter.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c schema.cpp -o schema.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c symbols.cpp -o symbols.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c table.cpp -o table.o > > g++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG > > -I"/usr/local/lib/R/site-library/Rcpp/include" -I/usr/local/include -fpic > > -g -O2 -fstack-protector-strong -Wformat -Werror=format-security > > -Wdate-time -D_FORTIFY_SOURCE=2 -g -c threadpool.cpp -o threadpool.o > > g++ -std=gnu++11 -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o > > arrow.so array.o array_from_vector.o array_to_vector.o arraydata.o > > arrowExports.o buffer.o chunkedarray.o compression.o compute.o csv.o > > datatype.o feather.o field.o filesystem.o io.o json.o memorypool.o > > message.o parquet.o recordbatch.o recordbatchreader.o recordbatchwriter.o > > schema.o symbols.o table.o threadpool.o -L/usr/local/lib/R/lib -lR > > installing to /usr/local/lib/R/site-library/00LOCK-arrow/00new/arrow/libs > > ** R > > ** inst > > ** byte-compile and prepare package for lazy loading > > ** help > > *** installing help indices > > ** building package indices > > ** installing vignettes > > ** testing if installed package can be loaded from temporary location > > ** checking absolute paths in shared objects and dynamic libraries > > ** testing if installed package can be loaded from final location > > ** testing if installed package keeps a record of temporary installation > > path > > * DONE (arrow) > > > > The downloaded source packages are in > > ‘/tmp/RtmpFQeIkA/downloaded_packages’ > > > arrow::install_arrow() > > See the Arrow C++ developer guide < > > https://arrow.apache.org/docs/developers/cpp.html> for instructions on > > building the library from source. > > > > After you've installed the C++ library, you'll need to reinstall the R > > package from source to find it. > > > > Refer to the R package README < > > https://github.com/apache/arrow/blob/master/r/README.md> for further > > details. > > > > If you have other trouble, or if you think this message could be improved, > > please report an issue here: < > > https://issues.apache.org/jira/projects/ARROW/issues> > > > options(arrow.use_threads=FALSE) > > > r <- > > arrow::read_arrow('/hello/CLOPROCESS_TrancheHistory_Expense.arrow') > > Error in io___ReadableFile__Open(clean_path_abs(path)) : > > Cannot call io___ReadableFile__Open(). Please use arrow::install_arrow() > > to install required runtime libraries. > > > q() > > root@66311c2b2dc5:/hello/arrow-master/cpp/release# ls > > CMakeCache.txt cmake_install.cmake CTestTestfile.cmake Makefile > > release tmp > > CMakeFiles cmake_summary.json jemalloc_ep-prefix rapidjson_ep src > > root@66311c2b2dc5:/hello/arrow-master/cpp/release# R > > > > R version 3.6.1 (2019-07-05) -- "Action of the Toes" > > Copyright (C) 2019 The R Foundation for Statistical Computing > > Platform: x86_64-pc-linux-gnu (64-bit) > > > > R is free software and comes with ABSOLUTELY NO WARRANTY. > > You are welcome to redistribute it under certain conditions. > > Type 'license()' or 'licence()' for distribution details. > > > > R is a collaborative project with many contributors. > > Type 'contributors()' for more information and > > 'citation()' on how to cite R or R packages in publications. > > > > Type 'demo()' for some demos, 'help()' for on-line help, or > > 'help.start()' for an HTML browser interface to help. > > Type 'q()' to quit R. > > > > > arrow::arrow_available() > > FALSE > > > > > > > > > > > > > > > > > > > > ############ > > > > > > > > Christian Klar > > TFG Asset Management > > Tetragon Financial Management > > 399 Park Avenue, 22nd Floor | New York, NY 10022 | United States > > Direct: +1 212 359 7369 | Main: +1 212 359 7300 | Mobile: +1 607 216 5045 > > ck...@tetragoninv.com > > www.tetragoninv.com > > > > > > This communication and all or some of the information contained therein > > may be confidential. If you have received this communication in error, > > please destroy all electronic and paper copies and notify the sender > > immediately. Unless specifically indicated, this communication is not a > > confirmation, an offer to sell or solicitation of any offer to buy any > > financial product, or an official statement of Tetragon Financial Group or > > its affiliates. TFG Asset Management L.P. and Tetragon Financial Management > > LP are registered as investment advisers under the U.S. Investment Advisers > > Act of 1940. > > > > -----Original Message----- > > From: Wes McKinney [mailto:wesmck...@gmail.com] > > Sent: Sunday, December 1, 2019 6:12 PM > > To: dev@arrow.apache.org > > Cc: Anthony Abate; Jason De Biasio > > Subject: Re: Issues with installation on docker / R > > > > Your instructions do not include “make install” when building the C++ > > library which will cause this problem. Can you provide a full build log if > > you are actually installing the C++ library and the R build cannot find it > > for some reason? > > > > Thanks > > > > On Sun, Dec 1, 2019 at 4:55 PM Christian Klar <ck...@tetragoninv.com> > > wrote: > > > > > Hi – > > > > > > > > > > > > (Resending because I was not subscribed to the mailing list prior.) > > > > > > > > > > > > I’m trying to install arrow on a docker image with R on it but R gives me > > > always the > > > > > > > > > > > > “error in io___ReadableFile__Open(clean_path_abs(path)) : > > > > > > Cannot call io___ReadableFile__Open(). Please use > > arrow::install_arrow() > > > to install required runtime libraries.” > > > > > > > > > > > > error. > > > > > > > > > > > > > > > > > > Below the details: > > > > > > > > > > > > > > > > > > 1. The docker image. > > > > > > > > > > > > FROM rocker/tidyverse > > > > > > ENV DEBIAN_FRONTEND noninteractive > > > > > > RUN apt-get install -y -V \ > > > > > > build-essential \ > > > > > > cmake \ > > > > > > libboost-filesystem-dev \ > > > > > > libboost-regex-dev \ > > > > > > libboost-system-dev > > > > > > RUN apt update && \ > > > > > > apt install -y -V \ > > > > > > autoconf-archive \ > > > > > > gtk-doc-tools \ > > > > > > libgirepository1.0-dev \ > > > > > > libglib2.0-doc \ > > > > > > libtool \ > > > > > > pkg-config && \ > > > > > > apt clean && \ > > > > > > rm -rf /var/lib/apt/lists/* > > > > > > > > > > > > > > > > > > 2. Then within an interactive session (interactive so that I can > > > debug easier) I run the actual cmake (I downloaded the arrow package > > > manually). This is straight from > > > https://arrow.apache.org/docs/developers/cpp.html. > > > > > > > > > > > > cd arrow/cpp > > > > > > mkdir release > > > > > > cd release > > > > > > cmake .. > > > > > > make > > > > > > > > > > > > > > > > > > 3. After number 2 finishing successfully I start R and try > > > “install.packages(‘arrow’)” which succeeds (builds it from source), but > > > then I get back to the error above. > > > > > > > > > > > > 4. install_arrow() just directs me to the link in number 2. > > > > > > > > > > > > > > > > > > > > > > > > I have the feeling the R package installation can’t find the path with > > the > > > arrow installation, however I can’t find any environment variable that > > > would handle this. > > > > > > > > > > > > Please let us know. At this point we spent many hours trying to get it to > > > work – but this has to be an issue people have come across. > > > > > > > > > > > > I’m not using conda so this (the only thing comparable that I could find) > > > is not applicable to me: > > > > > > https://github.com/apache/arrow/issues/4399 > > > > > > > > > > > > Happy to provide further details. I also attached the full console log. > > > > > > > > > > > > Christian > > > > > > > > > > > > > > > > > > Christian Klar > > > TFG Asset Management > > > Tetragon Financial Management > > > 399 Park Avenue, 22nd Floor > > > < > > https://www.google.com/maps/search/399+Park+Avenue,+22nd+Floor+%7C+New+York+,+NY+10022+%7C+United+States?entry=gmail&source=g > > > > > > | > > > < > > https://www.google.com/maps/search/399+Park+Avenue,+22nd+Floor+%7C+New+York+,+NY+10022+%7C+United+States?entry=gmail&source=g > > > > > > New York > > > < > > https://www.google.com/maps/search/399+Park+Avenue,+22nd+Floor+%7C+New+York+,+NY+10022+%7C+United+States?entry=gmail&source=g > > > > > > , NY > > > < > > https://www.google.com/maps/search/399+Park+Avenue,+22nd+Floor+%7C+New+York+,+NY+10022+%7C+United+States?entry=gmail&source=g > > > > > > 10022 > > > < > > https://www.google.com/maps/search/399+Park+Avenue,+22nd+Floor+%7C+New+York+,+NY+10022+%7C+United+States?entry=gmail&source=g > > > > > > | > > > < > > https://www.google.com/maps/search/399+Park+Avenue,+22nd+Floor+%7C+New+York+,+NY+10022+%7C+United+States?entry=gmail&source=g > > > > > > United States > > > < > > https://www.google.com/maps/search/399+Park+Avenue,+22nd+Floor+%7C+New+York+,+NY+10022+%7C+United+States?entry=gmail&source=g > > > > > > Direct: +1 212 359 7369 | Main: +1 212 359 7300 | Mobile: +1 607 216 5045 > > > ck...@tetragoninv.com > > > www.tetragoninv.com > > > > > > This communication and all or some of the information contained therein > > > may be confidential. If you have received this communication in error, > > > < > > https://www.google.com/maps/search/399+Park+Avenue,+22nd+Floor+%7C+New+York+,+NY+10022+%7C+United+States?entry=gmail&source=g > > > > > > please destroy all electronic and paper copies and notify the sender > > > immediately. Unless specifically indicated, this communication is not a > > > confirmation, an offer to sell or solicitation of any offer to buy any > > > financial product, or an official statement of Tetragon Financial Group > > or > > > its affiliates. TFG Asset Management L.P. and Tetragon Financial > > Management > > > LP are registered as investment advisers under the U.S. Investment > > Advisers > > > Act of 1940. > > > > > > > > > > > > > >
