Sorry, I should've been more specific. I just meant that it didn't prevent the pipeline from running and that it recognized the named entities in the small examples I gave it.
It could be that it is causing the LVG annotator to operate incorrectly in a way that didn't obviously affect downstream components at a glance. Tim On 07/10/2014 11:59 AM, Masanz, James J. wrote: > Hi Tim, > > When you say that it didn't seem to affect the run, where you comparing > output to last release or just checking if data seemed OK at a glance? > > -----Original Message----- > From: Miller, Timothy [mailto:timothy.mil...@childrens.harvard.edu] > Sent: Thursday, July 10, 2014 7:29 AM > To: dev@ctakes.apache.org > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) > > I was able to run the binary without issues this time. > I also downloaded the resources from sourceforge and integrated into the bin > release and ran with the ctakes dictionary. > > I did get some weird exceptions thrown that didn't seem to affect the run -- > looks like some hardcoded file paths in LVG? (See below) > > Tim > > > Exception: java.io.FileNotFoundException: > /export/home/lu/Development/LVG/lvg2008/data/misc/stopWords.data (No such > file or directory) > ** Error: problem of opening/reading stop words file: > '/export/home/lu/Development/LVG/lvg2008/data/misc/stopWords.data'. > Exception: java.io.FileNotFoundException: > /export/home/lu/Development/LVG/lvg2008/data/misc/nonInfoWords.data (No such > file or directory) > ** Error: problem of opening/reading non-Info words file: > '/export/home/lu/Development/LVG/lvg2008/data/misc/nonInfoWords.data'. > Exception: java.io.FileNotFoundException: > /export/home/lu/Development/LVG/lvg2008/data/misc/conjunctionWord.data (No > such file or directory) > ** Error: problem of opening/reading conjunction words file: > '/export/home/lu/Development/LVG/lvg2008/data/misc/conjunctionWord.data'. > ** ERR: problem of opening/reading diacritics file: > '/export/home/lu/Development/LVG/lvg2008/data/Unicode/diacriticMap.data'. > Exception: java.io.FileNotFoundException: > /export/home/lu/Development/LVG/lvg2008/data/Unicode/diacriticMap.data (No > such file or directory) > Exception: java.io.FileNotFoundException: > /export/home/lu/Development/LVG/lvg2008/data/Unicode/ligatureMap.data (No > such file or directory) > ** Error: problem of opening/reading ligature file: > '/export/home/lu/Development/LVG/lvg2008/data/Unicode/ligatureMap.data'. > ** Error: problem of opening/reading symbol synonym file: > '/export/home/lu/Development/LVG/lvg2008/data/Unicode/synonymMap.data'. > Exception: java.io.FileNotFoundException: > /export/home/lu/Development/LVG/lvg2008/data/Unicode/synonymMap.data (No such > file or directory) > **Error: problem of opening/reading file > '/export/home/lu/Development/LVG/lvg2008/data/misc/removeS.data'. > Exception: java.io.FileNotFoundException: > /export/home/lu/Development/LVG/lvg2008/data/misc/removeS.data (No such file > or directory) > ** Error: problem of opening/reading Unicode symbol file: > '/export/home/lu/Development/LVG/lvg2008/data/Unicode/symbolMap.data'. > Exception: java.io.FileNotFoundException: > /export/home/lu/Development/LVG/lvg2008/data/Unicode/symbolMap.data (No such > file or directory) > ** Error: problem of opening/reading Unicode file: > '/export/home/lu/Development/LVG/lvg2008/data/Unicode/unicodeMap.data'. > Exception: java.io.FileNotFoundException: > /export/home/lu/Development/LVG/lvg2008/data/Unicode/unicodeMap.data (No such > file or directory) > ** Error: problem of opening/reading nonStripMap file: > '/export/home/lu/Development/LVG/lvg2008/data/Unicode/nonStripMap.data'. > Exception: java.io.FileNotFoundException: > /export/home/lu/Development/LVG/lvg2008/data/Unicode/nonStripMap.data (No > such file or directory) > java.sql.SQLException: File input/output error > /export/home/lu/Development/LVG/lvg2008/data/HSqlDb/lvg2008.properties > java.io.FileNotFoundException: > /export/home/lu/Development/LVG/lvg2008/data/HSqlDb/lvg2008.properties.new > (No such file or directory) > > ________________________________________ > From: Masanz, James J. [masanz.ja...@mayo.edu] > Sent: Wednesday, July 09, 2014 2:26 PM > To: 'dev@ctakes.apache.org' > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) > > So far for rc2, I've > > Verified MD5 and signatures of .zip archives > Verified that source at tag matches source in.zip > Imported source from archive into eclipse as maven project(s) and compiled > without any Errors. > > -- James > > > -----Original Message----- > From: Pei Chen [mailto:chen...@apache.org] > Sent: Tuesday, July 08, 2014 5:11 PM > To: dev@ctakes.apache.org > Subject: [VOTE] Release Apache cTAKES 3.2.0 (rc2) > > Hi all, > > The main difference between rc1 and rc2 is that we removed the lvg-res > and assertion-res.jar from the distro. They still need to be > unpacked. > > This is a call for a vote on releasing the following candidate (rc2) > as Apache cTAKES 3.2.0. > The major changes include: > - New optional YTEX component(s) (Yale Extensions to cTAKES) > - New optional improved/faster dictionary lookup (dictionary-lookup-fast) > - New optional Temporal component (Time + Event extraction. Relations > will be including in a future release.) > - Other bug fixes/enhancements from Jira > > [TODO: Online documentation still needs to be updated on wiki] > > For more detailed information on the changes/release notes, please visit: > https://issues.apache.org/jira/secure/ReleaseNote.jspa?projectId=12313621&version=12324066 > > The release was made using the cTAKES release process documented here: > http://ctakes.apache.org/ctakes-release-guide.html > > The candidate is available at: > http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ctakes-3.2.0-src.tar.gz > /.zip > > The tag to be voted on: > http://svn.apache.org/repos/asf/ctakes/tags/ctakes-3.2.0-rc2 > > The MD5 checksum of the tarball can be found at: > http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ctakes-3.2.0-src.tar.gz.md5 > /.zip.md5 > > The signature of the tarball can be found at: > http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ctakes-3.2.0-src.tar.gz.asc > /.zip.asc > > Apache cTAKES' KEYS file, containing the PGP keys used to sign the release: > https://dist.apache.org/repos/dist/release/ctakes/KEYS > > Please vote on releasing these packages as Apache cTAKES 3.2.0. The > vote is open for at least the next 72 hours. > Only votes from the cTAKES PMC are binding, but folks are welcome to > check the release candidate and voice their approval or disapproval. > The vote passes if at least three binding +1 votes are cast. > > [ ] +1 Release the packages as Apache cTAKES 3.2.0 > [ ] -1 Do not release the packages because... > > Also, the convenience binary can be found at: > http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ctakes-3.2.0-bin.tar.gz > /.zip > > Note: It's temporarily on people.a.o because the artifacts were too > large for https://dist.apache.org/repos/dist/dev/ctakes (Working with > infra on increasing the limit). > > > Thanks! >
