You would probably need to write an annotator for PSA and TNM staging as currently cTAKES does not these cancer-specific variables extracted. We are working on such annotators but will be some time before we release them.
However, it should not be difficult for you to add a new annotator. --Guergana Savova From: Sangram Patil [mailto:[email protected]] Sent: Wednesday, May 20, 2015 10:02 AM To: [email protected] Subject: Re: Content extract and classification of Patient's note Thanks for the information!!! I have notes of cancer patients and would like to extract values such PSA, Gleason TNM staging mentioned in the text-note. Could you please provide inputs. On Mon, May 18, 2015 at 6:40 PM, Chen, Pei <[email protected]<mailto:[email protected]>> wrote: Sangram, cTAKES is modular by design so it is comprised of a collection of components/modules with some Default or Sample Aggregate pipelines. There could be an endless combination depending on the task at hand. I would suggest checking out the components guide (even though it may be outdated) to figure out what would be needed for a specific task... On May 18, 2015, at 2:18 AM, Sangram Patil <[email protected]<mailto:[email protected]><mailto:[email protected]<mailto:[email protected]>>> wrote: Hi, I am pretty new to cTakes, and need to extract fields from text note of patient. Could you please tell me which AE is suitable. Also can I have some sample code examples for my job. Attached is the sample patient note. -- Sincerely, Sangram Patil <Patient-note.txt> -- * Please include your practice ID in your correspondence. Sincerely, Sangram Patil Team Lead-Core Dev Cell: +91 992 293 9497 [cid:8DBA14FA-A66C-440F-B247-FE46832624AA] figmd.com<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.figmd.com_&d=BQMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=SeLHlpmrGNnJ9mI2WCgf_wwQk9zL4aIrVmfBoSi-j0kfEcrO4yRGmRCJNAr-rCmP&m=Oxn4f1QXmtAtTH18M3rQM0FB6wb1OMW3zDJAWDFQJmk&s=6Ob4FjMGbuxkyiV6o5FSoDZ05xeG1UW3y991KHFgkcs&e=> CONFIDENTIALITY NOTICE<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.figmd.com_terms_&d=BQMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=SeLHlpmrGNnJ9mI2WCgf_wwQk9zL4aIrVmfBoSi-j0kfEcrO4yRGmRCJNAr-rCmP&m=Oxn4f1QXmtAtTH18M3rQM0FB6wb1OMW3zDJAWDFQJmk&s=S8-40SDamVkFw0HH9kD7-reHfS8-YPZgybcA9Q7s61M&e=>
