I created a new annotator for finding socio-demographic information from a clinical note. It works within eclipse, but fails when I run it from the packaged distribution created from mvn install.
Caused by: org.apache.uima.cas.CASRuntimeException: JCas type "org.apache.ctakes.sociodemo.Age" used in Java code, but was not declared in the XML type descriptor. Age is an Annotation. I didn't follow the normal convention of adding it to org.apache.ctakes.typesystem and put it in my package org.apache.ctakes.sociodemo. I added my descriptor xml file to AggregatePlaintextFastUMLSProcessor.xml. I think it might be a classpath issue (the jvm unable to find my descriptor file). I added the full absolute path to runctakesCVD.sh but it still persists. Any suggestions?
