That was it! Thanks. On Sat, Sep 19, 2015 at 8:00 AM, britt fitch < [email protected]> wrote:
> Did you declare the new Age type in TypeSystem.xml? > You may want to extend one of the existing types like EntityMention or > IdentifiedAnnotation. > > Cheers, > > Britt > > Britt Fitch > Wired Informatics > 265 Franklin St Ste 1702 > Boston, MA 02110 > http://wiredinformatics.com > [email protected] > > On Sep 18, 2015, at 11:46 PM, Christopher Baechle <[email protected]> > wrote: > > I created a new annotator for finding socio-demographic information > from a clinical note. It works within eclipse, but fails when I run it > from the packaged distribution created from mvn install. > > Caused by: org.apache.uima.cas.CASRuntimeException: JCas type > "org.apache.ctakes.sociodemo.Age" used in Java code, but was not > declared in the XML type descriptor. > > Age is an Annotation. I didn't follow the normal convention of adding > it to org.apache.ctakes.typesystem and put it in my package > org.apache.ctakes.sociodemo. > > I added my descriptor xml file to > AggregatePlaintextFastUMLSProcessor.xml. I think it might be a > classpath issue (the jvm unable to find my descriptor file). I added > the full absolute path to runctakesCVD.sh but it still persists. > > Any suggestions? > > >
