Thanks Tim, I did see that folder and its contents and it seemed the right place to begin. What I couldn't find was how/where to refer to one of those CustomCuiTui.Xml files in an engine description.
Peter On 1/4/18, 1:41 PM, "Miller, Timothy" <timothy.mil...@childrens.harvard.edu> wrote: >Peter, I know Sean is busy this week and he may not see this for a while. >But I tried this method over the summer and got it to work so I'm fairly >confident that's the right approach still. Some of the details may have >changed from two years ago, so I would also check out this directory as a >starting point: >https://urldefense.proofpoint.com/v2/url?u=http-3A__svn.apache.org_viewvc_ >ctakes_trunk_ctakes-2Ddictionary-2Dlookup-2Dfast-2Dres_src_main_resources_ >org_apache_ctakes_dictionary_lookup_fast_example_bsv_&d=DwIFAw&c=B73tqXN8E >c0ocRmZHMCntw&r=5LM1YwNyMUq7CWiSepCCsjTjwuVF4uswNF8BK5Orm10&m=j2h_timB4skc >lRz6ICf0XlmaUgJekZOOgGo_WF-iuDw&s=qbZInrnxDgeP2prW-pOoOFkVLFweja-ct48H8NWy >dIM&e= > >Tim > >________________________________________ >From: Abramowitsch, Peter <pabramowit...@hearst.com> >Sent: Thursday, January 4, 2018 7:28 AM >To: dev@ctakes.apache.org >Subject: Re: How to use external CSV or BSV in addition to FastUMLS >attention Sean [EXTERNAL] > >Further to my previous message, Sean, I was wondering if you could tell >me whether this answer you gave in 2015, is still the right way to do >things in ctakes4.x > >permalink: >https://urldefense.proofpoint.com/v2/url?u=http-3A__markmail.org_message_s >3ztinppusvsciss&d=DwIFAg&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=H >eup-IbsIg9Q1TPOylpP9FE4GTK-OqdTDRRNQXipowRLRjx0ibQrHEo8uYx6674h&m=Xq7U7BTl >hofW8xpZfuBKuudNTqry4yt5RzaoBoPLRIg&s=BSEa_ZZMusVnqd2JbfeyoBxsDD1ZdfsHVXO5 >6wR8erA&e= > >Subject: RE: How to update cTAKES so that new top level categories >come out based on local >dictionary?<https://urldefense.proofpoint.com/v2/url?u=http-3A__markmail.o >rg_message_s3ztinppusvsciss&d=DwIFAg&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdio >CoppxeFU&r=Heup-IbsIg9Q1TPOylpP9FE4GTK-OqdTDRRNQXipowRLRjx0ibQrHEo8uYx6674 >h&m=Xq7U7BTlhofW8xpZfuBKuudNTqry4yt5RzaoBoPLRIg&s=BSEa_ZZMusVnqd2JbfeyoBxs >DD1ZdfsHVXO56wR8erA&e=> [permalink] ><https://urldefense.proofpoint.com/v2/url?u=http-3A__markmail.org_message_ >s3ztinppusvsciss&d=DwIFAg&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r= >Heup-IbsIg9Q1TPOylpP9FE4GTK-OqdTDRRNQXipowRLRjx0ibQrHEo8uYx6674h&m=Xq7U7BT >lhofW8xpZfuBKuudNTqry4yt5RzaoBoPLRIg&s=BSEa_ZZMusVnqd2JbfeyoBxsDD1ZdfsHVXO >56wR8erA&e=> >From: Finan, Sean (sean...@childrens.harvard.edu) >Date: Oct 6, 2015 2:04:56 pm >List: org.apache.incubator.ctakes-dev > > >Regards >Peter > >From: <Abramowitsch>, Peter Abramowitsch ><pabramowit...@hearst.com<mailto:pabramowit...@hearst.com>> >Date: Thursday, January 4, 2018 at 12:50 PM >To: "dev@ctakes.apache.org<mailto:dev@ctakes.apache.org>" ><dev@ctakes.apache.org<mailto:dev@ctakes.apache.org>> >Subject: How to use external CSV or BSV in addition to FastUMLS > >Can someone point me to any up-to-date how-tos on how to include external >CSV/BSV type resources to add synonyms, and other terms for dictionary >lookup to augment the FAST UMLS resources that comes out of the box. >Perhaps I have missed something, but looking at the >CTakesDictionaryCreator UI, it looks like it is designed only to choose >subsets of the UMLS data set rather than allowing one to bring in >completely new information sources. I scoured the Marklogic ctakes user >archive, but so many of the entries are old and I'm not sure they >describe the current way of doing things. > >The only approach I could see would be to take use the AggregateEngine >description and have it point to the CSV annotator, creating a completely >new AE but this would build other types of annotation, whereas what I'm >thinking about is a case for creating identified mentions such as a >DiseaseDisorderMention based on finding an acronym that the UMLS resource >doesn't know about, even though the concept in its full textual form is >there. > >I'm sure this is not a unique request and apologize in advance if it has >already been answered somewhere > >- Peter
