Hi Sean, Please find the attachment of input and output text of ctakes. >From the ctakes output we can't identify which one is drug, disease, labtest >etc. (for example : tocilizumab is a drug, but the output text may not specify what is it?) Also, is there a way where we can group related information together? (e.g:- For each drug, identify the dosage/ root of administration/dosage strength/ Dosage Frequency etc?) How can we generate above expected output in a structured format? (HTML/JSON etc) Thanks & Regards AMAL M 9633746869 --------- Original Message --------- Subject: Re: Query on ctakes [EXTERNAL] From: "Finan, Sean" <sean.fi...@childrens.harvard.edu> Date: 3/9/18 7:46 pm To: "dev@ctakes.apache.org" <dev@ctakes.apache.org>
Hi Amal, Could you please provide a full example sentence with expected vs. produced output? ctakes isn't perfect but something like "fever" should be tagged. Thanks, Sean ________________________________________ From: ama...@acolade.co.in <ama...@acolade.co.in> Sent: Friday, March 9, 2018 12:59 AM To: dev@ctakes.apache.org Subject: Query on ctakes [EXTERNAL] Hello, Am a newbie to cTakes. So far I am able to complete user installation and able to generate the processed output. I am finding the extracted data NOT getting tagged with relevant concepts(contexts) like Drugs, Disease. Lab results etc...which is a real concern. Would appreciate if somebody could help me to achieve tagging of the extracted data. (e:g:- Fever to be tagged as Problem/Disease and abdominopelvic CT as Test(lab test)) Thanks & Regards AMAL M 9633746869
cTAKESFast C1609165 0.0 52 63 tocilizumab polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C1272919 0.0 72 76 oral polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0226896 0.0 72 76 oral polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C3854325 0.0 77 99 Janus kinase inhibitor polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0266700 0.0 77 82 Janus polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0031727 0.0 83 89 kinase polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C2930696 0.0 100 111 tofacitinib polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0226875 0.0 124 152 lower gastrointestinal tract polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C0017189 0.0 130 152 gastrointestinal tract polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C0549099 0.0 189 200 perforation polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0003873 0.0 263 283 rheumatoid arthritis polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0003864 0.0 274 283 arthritis polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0016169 0.0 317 324 fistula polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C2930696 0.0 331 342 tofacitinib polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0087111 0.0 343 352 treatment polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C3714541 0.0 409 414 fever polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0015967 0.0 409 414 fever polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0016529 0.0 409 414 fever polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0013428 0.0 419 426 dysuria polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C2930696 0.0 544 555 tofacitinib polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0063041 0.0 588 599 leflunomide polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0020336 0.0 601 619 hydroxychloroquine polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0032950 0.0 635 647 prednisolone polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0012634 0.0 685 692 Disease polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0057671 0.0 714 717 DAS polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0057671 0.0 723 726 DAS polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0012634 0.0 763 770 disease polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0026606 0.0 771 779 activity polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0038317 0.0 809 816 steroid polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C3714541 0.0 901 906 fever polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0015967 0.0 901 906 fever polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0016529 0.0 901 906 fever polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0013428 0.0 912 919 dysuria polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0015967 0.0 959 966 febrile polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0009676 0.0 985 993 confused polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C2930696 0.0 1001 1012 Tofacitinib polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0063041 0.0 1017 1028 leflunomide polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0000726 0.0 1089 1098 abdominal polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C0030797 0.0 1103 1109 pelvic polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C0041618 0.0 1110 1125 ultrasonography polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0042014 0.0 1152 1166 urine analysis polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0002778 0.0 1158 1166 analysis polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0034359 0.0 1176 1182 pyuria polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0200949 0.0 1227 1240 blood culture polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0005767 0.0 1227 1232 blood polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C2242979 0.0 1233 1240 culture polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0003232 0.0 1270 1280 antibiotic polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0701042 0.0 1292 1297 cipro polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0012634 0.0 1328 1338 conditions polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0344211 0.0 1364 1379 supportive care polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C3714541 0.0 1422 1427 fever polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0015967 0.0 1422 1427 fever polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0016529 0.0 1422 1427 fever polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C1704673 0.0 1439 1442 gas polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0042232 0.0 1479 1486 vaginal polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C0016169 0.0 1544 1551 fistula polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0227391 0.0 1564 1571 sigmoid polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C0009368 0.0 1572 1577 colon polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C0447612 0.0 1582 1594 vaginal wall polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C0042232 0.0 1582 1589 vaginal polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C0262329 0.0 1636 1639 sig polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C0009368 0.0 1646 1651 colon polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C0003232 0.0 1668 1679 antibiotics polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0070939 0.0 1693 1697 oper polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[AFTER] cTAKESFast C0009410 0.0 1711 1720 colostomy polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0185003 0.0 1734 1741 closure polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0016169 0.0 1745 1752 fistula polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0009410 0.0 1804 1813 Colostomy polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0677554 0.0 1846 1857 anastomosis polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0009566 0.0 1881 1894 complications polarity:[-1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0151664 0.0 1897 1926 Gastrointestinal perforation polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0549099 0.0 1915 1926 perforation polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0021845 0.0 2024 2046 intestinal perforation polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0021853 0.0 2024 2034 intestinal polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C0549099 0.0 2035 2046 perforation polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0023759 0.0 2048 2051 LIP polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C2930696 0.0 2157 2168 tofacitinib polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C1609165 0.0 2173 2184 tocilizumab polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0023759 0.0 2264 2267 LIP polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C1456820 0.0 2330 2351 tumor necrosis factor polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0333516 0.0 2330 2344 tumor necrosis polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0027651 0.0 2330 2335 tumor polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0027540 0.0 2336 2344 necrosis polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C1456820 0.0 2353 2356 TNF polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0013227 0.0 2360 2365 drugs polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C1609165 0.0 2392 2403 tocilizumab polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C2930696 0.0 2408 2419 tofacitinib polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0023759 0.0 2441 2444 LIP polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C0021469 0.0 2453 2463 inhibition polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0021764 0.0 2467 2478 interleukin polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0001527 0.0 2535 2545 fat tissue polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C0015677 0.0 2535 2538 fat polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0040300 0.0 2539 2545 tissue polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C0332148 0.0 2549 2555 likely polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0012817 0.0 2573 2584 diverticula polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0012634 0.0 2641 2648 disease polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0021760 0.0 2650 2654 IL-6 polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0079189 0.0 2688 2697 cytokines polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0015677 0.0 2731 2734 fat polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0021760 0.0 2786 2790 IL-6 polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0001527 0.0 2829 2839 fat tissue polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C0015677 0.0 2829 2832 fat polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0040300 0.0 2833 2839 tissue polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C0549099 0.0 2859 2870 perforation polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0007634 0.0 2891 2896 cells polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C0301872 0.0 2943 2958 immune response polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0009450 0.0 2962 2972 infections polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0851162 0.0 2962 2972 infections polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0026724 0.0 2976 2983 mucosal polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C2930696 0.0 2995 3006 Tofacitinib polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C1272919 0.0 3013 3017 oral polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0226896 0.0 3013 3017 oral polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C0028778 0.0 3047 3053 blocks polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0037083 0.0 3068 3077 signaling polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0079189 0.0 3089 3098 cytokines polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0301872 0.0 3117 3132 immune response polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0003864 0.0 3164 3173 arthritis polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C2930696 0.0 3179 3190 tofacitinib polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0021760 0.0 3192 3196 IL-6 polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C1533734 0.0 3224 3238 administration polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0001554 0.0 3224 3238 administration polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C2930696 0.0 3242 3253 tofacitinib polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C2930696 0.0 3298 3309 tofacitinib polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0021760 0.0 3313 3317 IL-6 polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C1609165 0.0 3333 3344 tocilizumab polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0032952 0.0 3365 3375 prednisone polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0013227 0.0 3412 3417 drugs polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0003211 0.0 3419 3425 NSAIDs polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0231337 0.0 3428 3437 older age polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0392148 0.0 3447 3455 presence polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0012813 0.0 3459 3473 diverticulitis polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C1704673 0.0 3511 3514 gas polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0549099 0.0 3530 3542 perforations polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0549099 0.0 3573 3584 perforation polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0003211 0.0 3615 3621 NSAIDs polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0589120 0.0 3633 3642 follow-up polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0025344 0.0 3643 3649 period polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C2930696 0.0 3685 3696 tofacitinib polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0231337 0.0 3705 3714 older age polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0021853 0.0 3726 3736 intestinal polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C0032950 0.0 3763 3775 prednisolone polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0023759 0.0 3824 3827 LIP polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C0231337 0.0 3883 3892 older age polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C2930696 0.0 3929 3940 tofacitinib polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C1273518 0.0 3950 3961 responsible polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[AFTER] cTAKESFast C0042253 0.0 3996 4011 vaginal fistula polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0042232 0.0 3996 4003 vaginal polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C0016169 0.0 4004 4011 fistula polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0041755 0.0 4045 4058 drug reaction polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0013227 0.0 4045 4049 drug polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0013089 0.0 4060 4063 ADR polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0033209 0.0 4089 4093 prob polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C1299581 0.0 4095 4099 able polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0013089 0.0 4100 4103 ADR polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C1510475 0.0 4170 4184 diverticulosis polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C1456820 0.0 4271 4274 TNF polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0028778 0.0 4277 4284 blocker polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0026606 0.0 4300 4308 activity polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C2930696 0.0 4321 4332 tofacitinib polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0023759 0.0 4372 4375 LIP polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false] cTAKESFast C2930696 0.0 4392 4403 tofacitinib polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C1609165 0.0 4408 4419 tocilizumab polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast C0012817 0.0 4528 4539 diverticula polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[BEFORE] cTAKESFast C0589507 0.0 4573 4583 initiation polarity:[1], uncertain=[false], subject=[patient], generic=[false], condition=[false], history=[false], doctimerel=[OVERLAP] cTAKESFast TIMEX 201 204 1,2 cTAKESFast TIMEX 430 443 November 2015 cTAKESFast TIMEX 504 513 12 years. cTAKESFast TIMEX 514 525 Five months cTAKESFast TIMEX 533 542 admission cTAKESFast TIMEX 557 574 5 mg twice daily) cTAKESFast TIMEX 783 803 the follow- ing days cTAKESFast TIMEX 863 885 early November of 2015 cTAKESFast TIMEX 1049 1065 the first day of cTAKESFast TIMEX 1351 1358 14 days cTAKESFast TIMEX 1386 1393 20 days cTAKESFast TIMEX 1788 1802 6 months later cTAKESFast TIMEX 2074 2080 30-day cTAKESFast TIMEX 2143 2155 recent years cTAKESFast TLINK CONTAINS November 2015(430,443) dysuria(419,426) cTAKESFast TLINK CONTAINS Five months(514,525) admission(533,542) cTAKESFast TLINK CONTAINS admission(533,542) admission(533,542) cTAKESFast TLINK CONTAINS admission(533,542) tofacitinib(544,555) cTAKESFast TLINK CONTAINS the follow- ing days(783,803) activity(771,779) cTAKESFast TLINK CONTAINS the first day of(1049,1065) stopped(1038,1045) cTAKESFast TLINK CONTAINS 14 days(1351,1358) resolved(1339,1347) cTAKESFast TLINK CONTAINS 14 days(1351,1358) care(1375,1379) cTAKESFast TLINK CONTAINS 6 months later(1788,1802) confirmed(1757,1766) cTAKESFast TLINK CONTAINS 30-day(2074,2080) mortality(2081,2090)
