Hi Amal, If I am right, the grouping of related information together is not yet available in cTAKES out of the box.
Also to generate output in a structured format, you can make use of HTMLWriter. For more detailed info on this, you can check out Sean’s response for “Output formats - CPE - cTAKES - Persist in database<http://mail-archives.apache.org/mod_mbox/ctakes-dev/201803.mbox/ajax/%3CCANs913CB3HVPJOu_EittK%3DMV9H6kD7p6U98xAbWO5QPNV0kd2w%40mail.gmail.com%3E>” thread under http://mail-archives.apache.org/mod_mbox/ctakes-dev/201803.mbox/browser Regards, Gandhi From: ama...@acolade.co.in [mailto:ama...@acolade.co.in] Sent: Monday, March 12, 2018 4:09 PM To: email@example.com Subject: RE: Query on ctakes [EXTERNAL] Hi Sean, Please find the attachment of input and output text of ctakes. From the ctakes output we can't identify which one is drug, disease, labtest etc. (for example : tocilizumab is a drug, but the output text may not specify what is it?) Also, is there a way where we can group related information together? (e.g:- For each drug, identify the dosage/ root of administration/dosage strength/ Dosage Frequency etc?) How can we generate above expected output in a structured format? (HTML/JSON etc) Thanks & Regards AMAL M 9633746869 --------- Original Message --------- Subject: Re: Query on ctakes [EXTERNAL] From: "Finan, Sean" <sean.fi...@childrens.harvard.edu<mailto:sean.fi...@childrens.harvard.edu>> Date: 3/9/18 7:46 pm To: "firstname.lastname@example.org<mailto:email@example.com>" <firstname.lastname@example.org<mailto:email@example.com>> Hi Amal, Could you please provide a full example sentence with expected vs. produced output? ctakes isn't perfect but something like "fever" should be tagged. Thanks, Sean ________________________________________ From: ama...@acolade.co.in<mailto:ama...@acolade.co.in> <ama...@acolade.co.in<mailto:ama...@acolade.co.in>> Sent: Friday, March 9, 2018 12:59 AM To: firstname.lastname@example.org<mailto:email@example.com> Subject: Query on ctakes [EXTERNAL] Hello, Am a newbie to cTakes. So far I am able to complete user installation and able to generate the processed output. I am finding the extracted data NOT getting tagged with relevant concepts(contexts) like Drugs, Disease. Lab results etc...which is a real concern. Would appreciate if somebody could help me to achieve tagging of the extracted data. (e:g:- Fever to be tagged as Problem/Disease and abdominopelvic CT as Test(lab test)) Thanks & Regards AMAL M 9633746869 This email and any files transmitted with it are confidential and intended solely for the use of the individual or entity to whom they are addressed. If you are not the named addressee you should not disseminate, distribute or copy this e-mail. Please notify the sender or system manager by email immediately if you have received this e-mail by mistake and delete this e-mail from your system. If you are not the intended recipient you are notified that disclosing, copying, distributing or taking any action in reliance on the contents of this information is strictly prohibited and against the law.