Gandhi, at first blush, I can't replicate your result using the code I submitted... but my code and config differ from trunk, so Sean is probably the best person to ask. I included unit tests with a mini-dictionary for ProcedureMentions, but they probably didn't play nicely with the rest of the framework. Sean, any insight?
On Mon, Mar 19, 2018 at 10:31 AM, Gandhi Rajan Natarajan < gandhi.natara...@arisglobal.com> wrote: > Hi All, > > I'm using LabValueFinder annotator in my piper file and when I analyze the > following text: > > > "HEPATIC FUNCTION PANEL Result Value Ref Range Albumin 2.2 (*) 3.7 - 5.1 > g/dL Total Protein 5.5 (*) 5.8 - 8.0 g/dL Alkaline Phosphatase 844 (*) 42 - > 121 IU/L" as mentioned in https://issues.apache.org/jira/browse/CTAKES-441 > > > > The resulted XML generated using XmiCasSerializer contains only one > LabMention as mentioned below: > > > <textsem:LabMention xmi:id="3876" sofa="1" begin="0" end="22" id="9" > ontologyConceptArr="1089 1109 1079 1099 1069" typeID="0" > discoveryTechnique="3" confidence="0.0" polarity="0" uncertainty="0" > conditional="false" generic="false" historyOf="0" labValue="3907" /> > > <relation:RelationArgument xmi:id="3922" id="0" argument="537" /> > > <relation:RelationArgument xmi:id="3917" id="0" argument="3876" /> > > <relation:ResultOfTextRelation xmi:id="3907" id="0" discoveryTechnique="0" > confidence="0.0" polarity="0" uncertainty="0" conditional="false" > arg1="3917" arg2="3922" /> > > <textsem:FractionAnnotation xmi:id="537" sofa="1" begin="56" end="59" > id="0" typeID="0" discoveryTechnique="0" confidence="0.0" polarity="0" > uncertainty="0" conditional="false" generic="false" historyOf="0" /> > > > But as per the comments in the issue, it is supposed to identify 3 lab > mentions. Any thoughts on this on how to achieve it ? > > Regards, > Gandhi > > This email and any files transmitted with it are confidential and intended > solely for the use of the individual or entity to whom they are addressed. > If you are not the named addressee you should not disseminate, distribute > or copy this e-mail. Please notify the sender or system manager by email > immediately if you have received this e-mail by mistake and delete this > e-mail from your system. If you are not the intended recipient you are > notified that disclosing, copying, distributing or taking any action in > reliance on the contents of this information is strictly prohibited and > against the law. >
