The custom dictionary lookup descriptor I use is the one I checked into the svn repo: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-web-rest/docker/customDictionary.xml?view=markup
for this to work you need to have the snomed/rxnorm dictionary somewhere that the dictionary module looks for dictionaries (like in $CTAKES_HOME/resources/) You can also check out the Docker build file for a step-by-step of setting up and building the war file with that setup. http://svn.apache.org/viewvc/ctakes/trunk/ctakes-web-rest/docker/Dockerfile?view=markup Tim -----Original Message----- From: "Miller, Timothy" <timothy.mil...@childrens.harvard.edu<mailto:%22Miller,%20timothy%22%20%3ctimothy.mil...@childrens.harvard.edu%3e>> Reply-to: <dev@ctakes.apache.org> To: dev@ctakes.apache.org <dev@ctakes.apache.org<mailto:%22...@ctakes.apache.org%22%20%3c...@ctakes.apache.org%3e>> Subject: Re: ctake web service [EXTERNAL] [SUSPICIOUS] Date: Tue, 5 Mar 2019 15:34:18 +0000 Assuming you meant me, I'm hosting on an ubuntu linux machine, and I'm using the hsql dictionary instead of the mysql dictionary. Tim -----Original Message----- From: Kathy Ferro <healthcare1...@gmail.com<mailto:healthcare1...@gmail.com><mailto:kathy%20ferro%20%3chealthcare1...@gmail.com%3e>> Reply-to: <dev@ctakes.apache.org<mailto:dev@ctakes.apache.org>> To: dev@ctakes.apache.org<mailto:dev@ctakes.apache.org><mailto:dev@ctakes.apache.org> Subject: Re: ctake web service [EXTERNAL] Date: Mon, 4 Mar 2019 22:57:22 -0500 Sean, What machine do you hosting the WS and mysql on? I am on window 10 server. mySQL ini file looks fine. I'm wondering window and mysql are not being friend. Thanks Kathy On Mon, Mar 4, 2019 at 10:52 AM Miller, Timothy < timothy.mil...@childrens.harvard.edu<mailto:timothy.mil...@childrens.harvard.edu><mailto:timothy.mil...@childrens.harvard.edu>> wrote: I don't know what the solution was, but I leave my ctakes REST server running basically full time and haven't seen time outs yet. Tim ________________________________________ From: gandhi rajan <gandhiraja...@gmail.com<mailto:gandhiraja...@gmail.com><mailto:gandhiraja...@gmail.com>> Sent: Monday, March 4, 2019 10:43 AM To: dev@ctakes.apache.org<mailto:dev@ctakes.apache.org><mailto:dev@ctakes.apache.org> Subject: Re: ctake web service [EXTERNAL] Hi Kathy, Sean did respond that there is no timeout happening from cTAKES end. You might probably have to look at database settings for this closed connection issue. Does someone have any clue on this? On Monday, March 4, 2019, Kathy Ferro <healthcare1...@gmail.com<mailto:healthcare1...@gmail.com><mailto:healthcare1...@gmail.com>> wrote: Gandhi, Do you get any response to this issue? Does it try to keep the connection open while WS is up? Or does it open and close after it's done? We are still getting this error. "ERROR JdbcRareWordDictionary - No operations allowed after statement closed." Thanks Kathy On Fri, Aug 17, 2018 at 9:43 AM Gandhi Rajan Natarajan < gandhi.natara...@arisglobal.com<mailto:gandhi.natara...@arisglobal.com><mailto:gandhi.natara...@arisglobal.com>> wrote: Hi Kathy, Sometime back we encountered this issue and the problem seems to be DB connections getting timed out. Currently we are using the following implementations: "org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary" and "org.apache.ctakes.dictionary.lookup2.concept.JdbcConceptFactory" Does anybody aware of any timeout settings that needs to be done in these implementations to avoid DB connection timeout issue? -----Original Message----- From: Kathy Ferro <healthcare1...@gmail.com<mailto:healthcare1...@gmail.com><mailto:healthcare1...@gmail.com>> Sent: Thursday, August 16, 2018 11:07 PM To: dev@ctakes.apache.org<mailto:dev@ctakes.apache.org><mailto:dev@ctakes.apache.org> Subject: ctake web service Hi, Just want to see if anybody has experience this issue. If the web service had been up for a day or two, it will drop the dictionary lookup. The only result it returns are ConllDependencyNode tag in the xmi file; no mention, no concept, etc... I haven't have a chance to investigate it, yet. Kathy This email and any files transmitted with it are confidential and intended solely for the use of the individual or entity to whom they are addressed. If you are not the named addressee you should not disseminate, distribute or copy this e-mail. Please notify the sender or system manager by email immediately if you have received this e-mail by mistake and delete this e-mail from your system. If you are not the intended recipient you are notified that disclosing, copying, distributing or taking any action in reliance on the contents of this information is strictly prohibited and against the law. -- Regards, Gandhi "The best way to find urself is to lose urself in the service of others !!!"
