Thank you, Tim. I don't know where I get Sean from. On Tue, Mar 5, 2019 at 11:11 AM Miller, Timothy < timothy.mil...@childrens.harvard.edu> wrote:
> The custom dictionary lookup descriptor I use is the one I checked into > the svn repo: > > http://svn.apache.org/viewvc/ctakes/trunk/ctakes-web-rest/docker/customDictionary.xml?view=markup > > for this to work you need to have the snomed/rxnorm dictionary somewhere > that the dictionary module looks for dictionaries (like in > $CTAKES_HOME/resources/) > > You can also check out the Docker build file for a step-by-step of setting > up and building the war file with that setup. > > http://svn.apache.org/viewvc/ctakes/trunk/ctakes-web-rest/docker/Dockerfile?view=markup > > Tim > > > -----Original Message----- > From: "Miller, Timothy" <timothy.mil...@childrens.harvard.edu<mailto: > %22Miller,%20timothy%22%20%3ctimothy.mil...@childrens.harvard.edu%3e>> > Reply-to: <dev@ctakes.apache.org> > To: dev@ctakes.apache.org <dev@ctakes.apache.org<mailto:% > 22...@ctakes.apache.org%22%20%3c...@ctakes.apache.org%3e>> > Subject: Re: ctake web service [EXTERNAL] [SUSPICIOUS] > Date: Tue, 5 Mar 2019 15:34:18 +0000 > > > Assuming you meant me, I'm hosting on an ubuntu linux machine, and I'm > using the hsql dictionary instead of the mysql dictionary. > Tim > > > -----Original Message----- > From: Kathy Ferro <healthcare1...@gmail.com<mailto: > healthcare1...@gmail.com><mailto: > kathy%20ferro%20%3chealthcare1...@gmail.com%3e>> > Reply-to: <dev@ctakes.apache.org<mailto:dev@ctakes.apache.org>> > To: dev@ctakes.apache.org<mailto:dev@ctakes.apache.org><mailto: > dev@ctakes.apache.org> > Subject: Re: ctake web service [EXTERNAL] > Date: Mon, 4 Mar 2019 22:57:22 -0500 > > > Sean, > > What machine do you hosting the WS and mysql on? I am on window 10 > server. mySQL ini file looks fine. I'm wondering window and mysql are not > being friend. > > Thanks > Kathy > > On Mon, Mar 4, 2019 at 10:52 AM Miller, Timothy < > timothy.mil...@childrens.harvard.edu<mailto: > timothy.mil...@childrens.harvard.edu><mailto: > timothy.mil...@childrens.harvard.edu>> wrote: > > > > I don't know what the solution was, but I leave my ctakes REST server > running basically full time and haven't seen time outs yet. > Tim > > ________________________________________ > From: gandhi rajan <gandhiraja...@gmail.com<mailto:gandhiraja...@gmail.com > ><mailto:gandhiraja...@gmail.com>> > Sent: Monday, March 4, 2019 10:43 AM > To: dev@ctakes.apache.org<mailto:dev@ctakes.apache.org><mailto: > dev@ctakes.apache.org> > Subject: Re: ctake web service [EXTERNAL] > > Hi Kathy, Sean did respond that there is no timeout happening from cTAKES > end. You might probably have to look at database settings for this closed > connection issue. > > Does someone have any clue on this? > > On Monday, March 4, 2019, Kathy Ferro <healthcare1...@gmail.com<mailto: > healthcare1...@gmail.com><mailto:healthcare1...@gmail.com>> wrote: > > > > Gandhi, > > Do you get any response to this issue? Does it try to keep the > > > connection > > > open while WS is up? Or does it open and close after it's done? > > We are still getting this error. > "ERROR JdbcRareWordDictionary - No operations allowed after statement > closed." > > Thanks > Kathy > > > > On Fri, Aug 17, 2018 at 9:43 AM Gandhi Rajan Natarajan < > gandhi.natara...@arisglobal.com<mailto:gandhi.natara...@arisglobal.com > ><mailto:gandhi.natara...@arisglobal.com>> wrote: > > > > Hi Kathy, > > Sometime back we encountered this issue and the problem seems to be DB > connections getting timed out. > > Currently we are using the following implementations: > > > > > > "org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary" > > > > > and "org.apache.ctakes.dictionary.lookup2.concept.JdbcConceptFactory" > > Does anybody aware of any timeout settings that needs to be done in > > > > > these > > > > > implementations to avoid DB connection timeout issue? > > -----Original Message----- > From: Kathy Ferro <healthcare1...@gmail.com<mailto: > healthcare1...@gmail.com><mailto:healthcare1...@gmail.com>> > Sent: Thursday, August 16, 2018 11:07 PM > To: dev@ctakes.apache.org<mailto:dev@ctakes.apache.org><mailto: > dev@ctakes.apache.org> > Subject: ctake web service > > Hi, > > Just want to see if anybody has experience this issue. > > If the web service had been up for a day or two, it will drop the > dictionary lookup. The only result it returns are ConllDependencyNode > > > tag > > > in the xmi file; no mention, no concept, etc... > > I haven't have a chance to investigate it, yet. > > Kathy > This email and any files transmitted with it are confidential and > > > intended > > > solely for the use of the individual or entity to whom they are > > > addressed. > > > If you are not the named addressee you should not disseminate, > > > > > distribute > > > > > or copy this e-mail. Please notify the sender or system manager by > > > > > email > > > > > immediately if you have received this e-mail by mistake and delete this > e-mail from your system. If you are not the intended recipient you are > notified that disclosing, copying, distributing or taking any action in > reliance on the contents of this information is strictly prohibited and > against the law. > > > > > > > > > -- > Regards, > Gandhi > > "The best way to find urself is to lose urself in the service of others > !!!" > > > >
