I think I've reduced the problem to something more manageable.

The problem is that the order of jar files in the generated .jnlp file changes.

When I use org.codehaus.mojo.webstart.webstart-maven-plugin:1.0-beta-2 hibernate-commons-annotations.jar is listed before persistence-api.jar

When I use org.codehaus.mojo.webstart-maven-plugin:1.0-beta-5 it is the other way around. Actually the order of jar files in totally different when using 1.0-beta-5.

Why does the order change?

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