Re: Release of Taverna Command Line?

[Alan Williams]

On 27-May-16 16:06, Gale Naylor wrote:
Okay. I'll test that. It makes sense. How about if we just add a notice in
the Readme? (Maybe even just suggest that Windows USERS install at their
top level directory?) Probably I'm the only one who buries their file so
deeply! :)

I think something in the README is a good idea as a quick workaround. I 
don't think though that the source directories that are failing are 
atypical. Mine are something like C:\Users\alson\taverna\commandline

http://stackoverflow.com/questions/27680647/does-max-path-issue-still-exists-in-windows-10 
suggests that the max length has been kept to ensure compatibility :O 
Also 
http://stackoverflow.com/questions/1880321/why-does-the-260-character-path-length-limit-exist-in-windows 
for "explanation"!

Alan

On Fri, May 27, 2016, 7:55 AM Stian Soiland-Reyes <st...@apache.org> wrote:

I managed to reproduce it as well - it's related to the folder length:

[INFO] Command was cmd.exe /X /C ""C:\Program
Files\Java\jdk1.8.0_92\jre\bin\java" -jar
"C:\Users\stain\ApacheTavernaBuilds\04 Try Engine

Again\incubator-taverna-engine\taverna-activity-archetype\target\test-classes\projects\dummyActivity\project\dummy-taverna-plugin\dummy-taverna-plugin-activity\target\surefire\surefirebooter3609180204497295203.jar"
"C:\Users\stain\ApacheTavernaBuilds\04 Try Engine

Again\incubator-taverna-engine\taverna-activity-archetype\target\test-classes\projects\dummyActivity\project\dummy-taverna-plugin\dummy-taverna-plugin-activity\target\surefire\surefire9169840870606093708tmp"
"C:\Users\stain\ApacheTavernaBuilds\04 Try Engine

Again\incubator-taverna-engine\taverna-activity-archetype\target\test-classes\projects\dummyActivity\project\dummy-taverna-plugin\dummy-taverna-plugin-activity\target\surefire\surefire_05020064088761634944tmp""
[INFO]  at
org.apache.maven.plugin.surefire.booterclient.ForkStarter.fork(ForkStarter.java:590)
[INFO]  at
org.apache.maven.plugin.surefire.booterclient.ForkStarter.fork(ForkStarter.java:460)
[INFO]  at
org.apache.maven.plugin.surefire.booterclient.ForkStarter.run(ForkStarter.java:229)
[INFO]  at
org.apache.maven.plugin.surefire.booterclient.ForkStarter.run(ForkStarter.java:201)
[INFO]  at
org.apache.maven.plugin.surefire.AbstractSurefireMojo.executeProvider(AbstractSurefireMojo.java:1026)
[INFO]  at
org.apache.maven.plugin.surefire.AbstractSurefireMojo.executeAfterPreconditionsChecked(AbstractSurefireMojo.java:862)
[INFO]  at
org.apache.maven.plugin.surefire.AbstractSurefireMojo.execute(AbstractSurefireMojo.java:755)
[INFO]  at
org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:134)
[INFO]  ... 21 more

On 27 May 2016 at 15:39, Stian Soiland-Reyes <st...@apache.org> wrote:
Hm, this error seems different from the previous

[ERROR] Archetype IT 'dummyActivity' failed: Cannot run additions goals.

I was able to reproduce the above in Windows 10 by removing the
maven-invoker dependency from the pom.xml - and if I add it back in,
it works.

IS it because of the space in your folder name
C:\Users\Gale\ApacheTavernaBuilds\04 Try Engine again\ or possibly the
total length of the file path?

I built it from D:\incubator-taverna-engine without reproducing the
problem.  Could you try to say build it from C:\1\  ?

(BTW - to save time you can test this by running just mvn clean
install within the taverna-activity-archetype folder)


If I try to copy this folder to my
C:\Users\stain\ApacheTavernaBuilds\04 Try Engine Again I actually get
an error from Windows Explorer:

The filename(s) would be too long for the destination folder
DummyActivityFactory.java

so a big hint that the folder paths of the internal test project can
become a bit long for Windows. (It's OK as long as you are inside
Java, you are allowed to make and use "too long" paths - but it breaks
as soon as you then try to start a sub-process as the inner maven fork
would do)


Should we disable this test on Windows or just warn about this in the
README? I think it could affect other parts as well - which is why I
tend to put my source code straight on my D:\ while in Windows :)



On 23 May 2016 at 15:01, Gale Naylor <ga...@noventussolutions.com>
wrote:
Sorry, BUILD FAILURE again. Actually, two: Dummy Taverna activity
and Apache Taverna Activity archetype.

[INFO] [INFO]
------------------------------------------------------------------------
[INFO] [INFO] Reactor Summary:
[INFO] [INFO]
[INFO] [INFO] Dummy Taverna project ..............................
SUCCESS
[ 12.754 s]
[INFO] [INFO] Dummy Taverna activity .............................
FAILURE
[ 23.582 s]
[INFO] [INFO] Dummy Taverna plugin ...............................
SKIPPED
[INFO] [INFO]
------------------------------------------------------------------------
[INFO] [INFO] BUILD FAILURE
[INFO] [INFO]
------------------------------------------------------------------------
[INFO] [INFO] Total time: 38.075 s
[INFO] [INFO] Finished at: 2016-05-23T06:51:36-07:00
[INFO] [INFO] Final Memory: 26M/202M
[INFO] [INFO]
------------------------------------------------------------------------
[INFO] [ERROR] Failed to execute goal
org.apache.maven.plugins:maven-surefire-plugin:2.19.1:test
(default-test)
on project dummy-taverna-plugin-activity: Execution default-test of goal
org.apache.maven.plugins:maven-surefire-plugin:2.19.1:test failed: The
forked VM terminated without properly saying goodbye. VM crash or
System.exit called?
[INFO] [ERROR] Command was cmd.exe /X /C
"c:\PROGRA~1\Java\JDK18~1.0_4\jre\bin\java -jar
"C:\Users\Gale\ApacheTavernaBuilds\04 Try Engine

again\incubator-taverna-engine-master\taverna-activity-archetype\target\test-classes\projects\dummyActivity\project\dummy-taverna-plugin\dummy-taverna-plugin-activity\target\surefire\surefirebooter7662048493632791084.jar"
"C:\Users\Gale\ApacheTavernaBuilds\04 Try Engine

again\incubator-taverna-engine-master\taverna-activity-archetype\target\test-classes\projects\dummyActivity\project\dummy-taverna-plugin\dummy-taverna-plugin-activity\target\surefire\surefire2131732548318184089tmp"
"C:\Users\Gale\ApacheTavernaBuilds\04 Try Engine

again\incubator-taverna-engine-master\taverna-activity-archetype\target\test-classes\projects\dummyActivity\project\dummy-taverna-plugin\dummy-taverna-plugin-activity\target\surefire\surefire_07668064436317001826tmp""
[INFO] [ERROR] -> [Help 1]
[INFO] org.apache.maven.lifecycle.LifecycleExecutionException: Failed to
execute goal org.apache.maven.plugins:maven-surefire-plugin:2.19.1:test
(default-test) on project dummy-taverna-plugin-activity: Execution
default-test of goal
org.apache.maven.plugins:maven-surefire-plugin:2.19.1:test failed: The
forked VM terminated without properly saying goodbye. VM crash or
System.exit called?
[INFO] Command was cmd.exe /X /C
"c:\PROGRA~1\Java\JDK18~1.0_4\jre\bin\java
-jar "C:\Users\Gale\ApacheTavernaBuilds\04 Try Engine

again\incubator-taverna-engine-master\taverna-activity-archetype\target\test-classes\projects\dummyActivity\project\dummy-taverna-plugin\dummy-taverna-plugin-activity\target\surefire\surefirebooter7662048493632791084.jar"
"C:\Users\Gale\ApacheTavernaBuilds\04 Try Engine

again\incubator-taverna-engine-master\taverna-activity-archetype\target\test-classes\projects\dummyActivity\project\dummy-taverna-plugin\dummy-taverna-plugin-activity\target\surefire\surefire2131732548318184089tmp"
"C:\Users\Gale\ApacheTavernaBuilds\04 Try Engine

again\incubator-taverna-engine-master\taverna-activity-archetype\target\test-classes\projects\dummyActivity\project\dummy-taverna-plugin\dummy-taverna-plugin-activity\target\surefire\surefire_07668064436317001826tmp""
[INFO] at

org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:212)
[INFO] at

org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
[INFO] at

org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
[INFO] at

org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:116)
[INFO] at

org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:80)
[INFO] at

org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuilder.java:51)
[INFO] at

org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:128)
[INFO] at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:307)
[INFO] at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:193)
[INFO] at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:106)
[INFO] at org.apache.maven.cli.MavenCli.execute(MavenCli.java:863)
[INFO] at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:288)
[INFO] at org.apache.maven.cli.MavenCli.main(MavenCli.java:199)
[INFO] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[INFO] at

sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
[INFO] at

sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[INFO] at java.lang.reflect.Method.invoke(Method.java:497)
[INFO] at

org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289)
[INFO] at

org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229)
[INFO] at

org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415)
[INFO] at

org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356)
[INFO] Caused by: org.apache.maven.plugin.PluginExecutionException:
Execution default-test of goal
org.apache.maven.plugins:maven-surefire-plugin:2.19.1:test failed: The
forked VM terminated without properly saying goodbye. VM crash or
System.exit called?
[INFO] Command was cmd.exe /X /C
"c:\PROGRA~1\Java\JDK18~1.0_4\jre\bin\java
-jar "C:\Users\Gale\ApacheTavernaBuilds\04 Try Engine

again\incubator-taverna-engine-master\taverna-activity-archetype\target\test-classes\projects\dummyActivity\project\dummy-taverna-plugin\dummy-taverna-plugin-activity\target\surefire\surefirebooter7662048493632791084.jar"
"C:\Users\Gale\ApacheTavernaBuilds\04 Try Engine

again\incubator-taverna-engine-master\taverna-activity-archetype\target\test-classes\projects\dummyActivity\project\dummy-taverna-plugin\dummy-taverna-plugin-activity\target\surefire\surefire2131732548318184089tmp"
"C:\Users\Gale\ApacheTavernaBuilds\04 Try Engine

again\incubator-taverna-engine-master\taverna-activity-archetype\target\test-classes\projects\dummyActivity\project\dummy-taverna-plugin\dummy-taverna-plugin-activity\target\surefire\surefire_07668064436317001826tmp""
[INFO] at

org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:145)
[INFO] at

org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:207)
[INFO] ... 20 more
[INFO] Caused by: java.lang.RuntimeException: The forked VM terminated
without properly saying goodbye. VM crash or System.exit called?
[INFO] Command was cmd.exe /X /C
"c:\PROGRA~1\Java\JDK18~1.0_4\jre\bin\java
-jar "C:\Users\Gale\ApacheTavernaBuilds\04 Try Engine

again\incubator-taverna-engine-master\taverna-activity-archetype\target\test-classes\projects\dummyActivity\project\dummy-taverna-plugin\dummy-taverna-plugin-activity\target\surefire\surefirebooter7662048493632791084.jar"
"C:\Users\Gale\ApacheTavernaBuilds\04 Try Engine

again\incubator-taverna-engine-master\taverna-activity-archetype\target\test-classes\projects\dummyActivity\project\dummy-taverna-plugin\dummy-taverna-plugin-activity\target\surefire\surefire2131732548318184089tmp"
"C:\Users\Gale\ApacheTavernaBuilds\04 Try Engine

again\incubator-taverna-engine-master\taverna-activity-archetype\target\test-classes\projects\dummyActivity\project\dummy-taverna-plugin\dummy-taverna-plugin-activity\target\surefire\surefire_07668064436317001826tmp""
[INFO] at

org.apache.maven.plugin.surefire.booterclient.ForkStarter.fork(ForkStarter.java:590)
[INFO] at

org.apache.maven.plugin.surefire.booterclient.ForkStarter.fork(ForkStarter.java:460)
[INFO] at

org.apache.maven.plugin.surefire.booterclient.ForkStarter.run(ForkStarter.java:229)
[INFO] at

org.apache.maven.plugin.surefire.booterclient.ForkStarter.run(ForkStarter.java:201)
[INFO] at

org.apache.maven.plugin.surefire.AbstractSurefireMojo.executeProvider(AbstractSurefireMojo.java:1026)
[INFO] at

org.apache.maven.plugin.surefire.AbstractSurefireMojo.executeAfterPreconditionsChecked(AbstractSurefireMojo.java:862)
[INFO] at

org.apache.maven.plugin.surefire.AbstractSurefireMojo.execute(AbstractSurefireMojo.java:755)
[INFO] at

org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:134)
[INFO] ... 21 more
[INFO] [ERROR]
[INFO] [ERROR] Re-run Maven using the -X switch to enable full debug
logging.
[INFO] [ERROR]
[INFO] [ERROR] For more information about the errors and possible
solutions, please read the following articles:
[INFO] [ERROR] [Help 1]

http://cwiki.apache.org/confluence/display/MAVEN/PluginExecutionException
[INFO] [ERROR]
[INFO] [ERROR] After correcting the problems, you can resume the build
with
the command
[INFO] [ERROR]   mvn <goals> -rf :dummy-taverna-plugin-activity
[INFO] Post-archetype-generation invoker exit code: 1
[INFO]
------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache Taverna Engine and Platform ................. SUCCESS [
 3.095 s]
[INFO] Apache Taverna Activity archetype .................. FAILURE [
46.310 s]
[INFO] Apache Taverna Reference Manager API ............... SKIPPED
[INFO] Apache Taverna Observer pattern .................... SKIPPED
[INFO] Apache Taverna Workflow Model API .................. SKIPPED
[INFO] Apache Taverna Workflow Model Extension Points ..... SKIPPED
[INFO] Apache Taverna Workflow Model impl ................. SKIPPED
[INFO] Apache Taverna Database Configuration API .......... SKIPPED
[INFO] Apache Taverna Reference Test Helpers .............. SKIPPED
[INFO] Apache Taverna Reference Manager impl .............. SKIPPED
[INFO] Apache Taverna Engine Reference Types .............. SKIPPED
[INFO] Apache Taverna Activity test utils ................. SKIPPED
[INFO] Apache Taverna Platform Capability API ............. SKIPPED
[INFO] Apache Taverna Platform Capability impl ............ SKIPPED
[INFO] Apache Taverna Credential Manager API .............. SKIPPED
[INFO] Apache Taverna Credential Manager impl ............. SKIPPED
[INFO] Apache Taverna Database Configuration impl ......... SKIPPED
[INFO] Apache Taverna Dataflow Activity ................... SKIPPED
[INFO] Apache Taverna Platform Report Service ............. SKIPPED
[INFO] Apache Taverna Platform Execution Service API ...... SKIPPED
[INFO] Apache Taverna Hadoop Workflow Execution Service ... SKIPPED
[INFO] Apache Taverna Platform Execution Service impl ..... SKIPPED
[INFO] Apache Taverna Platform Local Execution Service .... SKIPPED
[INFO] Apache Taverna Platform Remote Execution Service ... SKIPPED
[INFO] Apache Taverna Platform Run Service API ............ SKIPPED
[INFO] Apache Taverna Platform Run Service impl ........... SKIPPED
[INFO] Apache Taverna Services API ........................ SKIPPED
[INFO] Apache Taverna Platform Services impl .............. SKIPPED
[INFO] Apache Taverna StringConstant Activity ............. SKIPPED
[INFO]
------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO]
------------------------------------------------------------------------
[INFO] Total time: 51.317 s
[INFO] Finished at: 2016-05-23T06:51:36-07:00
[INFO] Final Memory: 41M/439M
[INFO]
------------------------------------------------------------------------
[ERROR] Failed to execute goal
org.apache.maven.plugins:maven-archetype-plugin:2.4:integration-test
(default-integration-test) on project taverna-activity-archetype:
[ERROR] Archetype IT 'dummyActivity' failed: Execution failure: exit
code =
1
[ERROR] -> [Help 1]
org.apache.maven.lifecycle.LifecycleExecutionException: Failed to
execute
goal
org.apache.maven.plugins:maven-archetype-plugin:2.4:integration-test
(default-integration-test) on project taverna-activity-archetype:
Archetype IT 'dummyActivity' failed: Execution failure: exit code = 1
at

org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:212)
at

org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
at

org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
at

org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:116)
at

org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:80)
at

org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuilder.java:51)
at

org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:128)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:307)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:193)
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:106)
at org.apache.maven.cli.MavenCli.execute(MavenCli.java:863)
at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:288)
at org.apache.maven.cli.MavenCli.main(MavenCli.java:199)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at

sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at

sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at

org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289)
at

org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229)
at

org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415)
at
org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356)
Caused by: org.apache.maven.plugin.MojoExecutionException:
Archetype IT 'dummyActivity' failed: Execution failure: exit code = 1
at

org.apache.maven.archetype.mojos.IntegrationTestMojo.execute(IntegrationTestMojo.java:269)
at

org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:134)
at

org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:207)
... 20 more
[ERROR]
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions,
please read the following articles:
[ERROR] [Help 1]
http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the
command
[ERROR]   mvn <goals> -rf :taverna-activity-archetype


On Mon, May 23, 2016 at 6:47 AM Gale Naylor <
ga...@noventussolutions.com>
wrote:

Yes, sorry - I'm at a conference and didn't check email yesterday. FYI
I'm
running mvn 3.3.9. I'll try it again.

On Sun, May 22, 2016 at 10:39 AM Stian Soiland-Reyes <st...@apache.org

wrote:

I added the explicit plugin dependency as described in ARCHETYPE-488 -
could you see if it works now on your setup, Gale?

On 22 May 2016 at 19:35, Stian Soiland-Reyes <st...@apache.org>
wrote:
On 22 May 2016 at 19:32, Stian Soiland-Reyes <st...@apache.org>
wrote:

We can try to add that workaround - I upgraded it to the newer
maven-archetype-plugin 2.5 now - is the problem still there?

Sorry, archetype-plugin 2.5 was not released yet  - so that didn't
work. :(


I'll see if some other workaround can be added.. or we can just
disable that test on Windows.

(I think it's something to do with mvn.cmd vs. mvn.bat ?)


--
Stian Soiland-Reyes
Apache Commons, Apache Taverna (incubating), Apache Commons RDF
(incubating)
http://orcid.org/0000-0001-9842-9718



--
Stian Soiland-Reyes
Apache Commons, Apache Taverna (incubating), Apache Commons RDF
(incubating)
http://orcid.org/0000-0001-9842-9718





--
Stian Soiland-Reyes
Apache Taverna (incubating), Apache Commons
http://orcid.org/0000-0001-9842-9718



--
Stian Soiland-Reyes
Apache Taverna (incubating), Apache Commons
http://orcid.org/0000-0001-9842-9718