On 8. Nov 2018, at 15:44, Marshall Schor <[email protected]> wrote:
>
> I'm wondering about the workaround you mentioned earlier. From the previously
> posted stack trace, it seems the issue is in DKPro. In looking at
> CasIOUtils, I
> don't see any use of ByteBuffer. Can you post a stack trace or some other
> evidence, that helps me figure out where to put the workaround?
The stack trace ends in DKPro Core code, but as far as I can tell, it isn't
caused there.
This is one of the lines which are reported in the stack trace is this one (no
ByteBuffer here):
CasIOUtils.load(new ByteArrayInputStream(bos.toByteArray()), target);
The only code in UIMA that I found where the problematic method is being used
is in DataIO - lines like:
in.position(in.position() + length);
It is very strange that the stack traces simply stop like that. My guess would
be that
the error is triggered as the respective class (e.g. indirectly via the loading
of CasIOUtils)
is being loaded/resolved.
At the end of the mail is a full list of all the exceptions being thrown by in
the particular
setup that I have described. The line numbers resolve to the following file in
the given commit:
https://github.com/dkpro/dkpro-core/blob/277d7a8bcc69c5c0ea6150c49566b524c1017d61/dkpro-core-io-bincas-asl/src/test/java/de/tudarmstadt/ukp/dkpro/core/io/bincas/BinaryCasWriterReaderTest.java
You'll note that none of the lines mentions a ByteBuffer. The only place in the
entire DKPro Core
where a ByteBuffer is used is in another module (...api-embeddings) - and even
there the
`position(int)` method isn't used.
At the moment, that is all the intelligence I can provide.
Cheers,
-- Richard
------
-------------------------------------------------------------------------------
Test set: de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest
-------------------------------------------------------------------------------
Tests run: 22, Failures: 0, Errors: 12, Skipped: 1, Time elapsed: 11.377 s <<<
FAILURE! - in de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest
test4Preinitialized(de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest)
Time elapsed: 0.269 s <<< ERROR!
java.lang.NoSuchMethodError:
java.nio.ByteBuffer.position(I)Ljava/nio/ByteBuffer;
at
de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest.read(BinaryCasWriterReaderTest.java:527)
at
de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest.test4Preinitialized(BinaryCasWriterReaderTest.java:150)
test_COMPRESSED_FILTERED_TSI_preinitialized(de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest)
Time elapsed: 0.232 s <<< ERROR!
java.lang.NoSuchMethodError:
java.nio.ByteBuffer.position(I)Ljava/nio/ByteBuffer;
at
de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest.read(BinaryCasWriterReaderTest.java:527)
at
de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest.test_COMPRESSED_FILTERED_TSI_preinitialized(BinaryCasWriterReaderTest.java:214)
readWriteZipMinimal(de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest)
Time elapsed: 0.257 s <<< ERROR!
java.lang.NoSuchMethodError:
java.nio.ByteBuffer.position(I)Ljava/nio/ByteBuffer;
at
de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest.readWriteZipMinimal(BinaryCasWriterReaderTest.java:294)
test_COMPRESSED_FILTERED_TSI_lenient(de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest)
Time elapsed: 0.157 s <<< ERROR!
java.lang.NoSuchMethodError:
java.nio.ByteBuffer.position(I)Ljava/nio/ByteBuffer;
at
de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest.read(BinaryCasWriterReaderTest.java:527)
at
de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest.test_COMPRESSED_FILTERED_TSI_lenient(BinaryCasWriterReaderTest.java:223)
test6plusLenient(de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest)
Time elapsed: 0.122 s <<< ERROR!
java.lang.NoSuchMethodError:
java.nio.ByteBuffer.position(I)Ljava/nio/ByteBuffer;
at
de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest.read(BinaryCasWriterReaderTest.java:527)
at
de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest.test6plusLenient(BinaryCasWriterReaderTest.java:241)
test6Preinitialized(de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest)
Time elapsed: 0.089 s <<< ERROR!
java.lang.NoSuchMethodError:
java.nio.ByteBuffer.position(I)Ljava/nio/ByteBuffer;
at
de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest.read(BinaryCasWriterReaderTest.java:527)
at
de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest.test6Preinitialized(BinaryCasWriterReaderTest.java:205)
testReadingFileWithoutDocumentMetaData(de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest)
Time elapsed: 0.079 s <<< ERROR!
java.lang.NoSuchMethodError:
java.nio.ByteBuffer.position(I)Ljava/nio/ByteBuffer;
at
de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest.testReadingFileWithoutDocumentMetaData(BinaryCasWriterReaderTest.java:351)
test6plusPreinitialized(de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest)
Time elapsed: 0.098 s <<< ERROR!
java.lang.NoSuchMethodError:
java.nio.ByteBuffer.position(I)Ljava/nio/ByteBuffer;
at
de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest.read(BinaryCasWriterReaderTest.java:527)
at
de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest.test6plusPreinitialized(BinaryCasWriterReaderTest.java:232)
testReadingFileWithDocumentMetaData(de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest)
Time elapsed: 0.074 s <<< ERROR!
java.lang.NoSuchMethodError:
java.nio.ByteBuffer.position(I)Ljava/nio/ByteBuffer;
at
de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest.testReadingFileWithDocumentMetaData(BinaryCasWriterReaderTest.java:320)
test6Lenient(de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest)
Time elapsed: 0.076 s <<< ERROR!
java.lang.NoSuchMethodError:
java.nio.ByteBuffer.position(I)Ljava/nio/ByteBuffer;
at
de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest.read(BinaryCasWriterReaderTest.java:527)
at
de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest.test6Lenient(BinaryCasWriterReaderTest.java:163)
testReadingFileOverridingDocumentMetaData(de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest)
Time elapsed: 0.079 s <<< ERROR!
java.lang.NoSuchMethodError:
java.nio.ByteBuffer.position(I)Ljava/nio/ByteBuffer;
at
de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest.testReadingFileOverridingDocumentMetaData(BinaryCasWriterReaderTest.java:389)
test6LenientPlainUima(de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest)
Time elapsed: 0.038 s <<< ERROR!
java.lang.NoSuchMethodError:
java.nio.ByteBuffer.position(I)Ljava/nio/ByteBuffer;
at
de.tudarmstadt.ukp.dkpro.core.io.bincas.BinaryCasWriterReaderTest.test6LenientPlainUima(BinaryCasWriterReaderTest.java:197)
