Hello!
After I ran into problems with a self-compiled OpenMPI 4.0.1 and CP2K
('make test' fails for the latter and also a couple of input files are
dysfunctional with the MPI version), I though it might help to give the
Git version of OpenMPI a try. However, I can build neither 'v4.0.x'
(673ddae) nor 'master' (7b7ad5e). Both fail during the linking of
'libopen-pal.so'. Is this expected?
The error for 'master' is ('v4.0.x' shows a different line number in the
Makefile):
> make[2]: Entering directory
> '/dev/shm/Setup/build/openmpi-git/opal/tools/wrappers'
> CC opal_wrapper.o
> CCLD opal_wrapper
> ../../../opal/.libs/libopen-pal.so: undefined reference to
> `mca_crs_none_component'
> ../../../opal/.libs/libopen-pal.so: undefined reference to
> `mca_reachable_netlink_component'
> ../../../opal/.libs/libopen-pal.so: undefined reference to
> `mca_pstat_linux_component'
> ../../../opal/.libs/libopen-pal.so: undefined reference to
> `mca_shmem_posix_component'
> ../../../opal/.libs/libopen-pal.so: undefined reference to
> `mca_btl_tcp_component'
> ../../../opal/.libs/libopen-pal.so: undefined reference to
> `mca_patcher_overwrite_component'
> ../../../opal/.libs/libopen-pal.so: undefined reference to
> `mca_btl_uct_component'
> ../../../opal/.libs/libopen-pal.so: undefined reference to
> `mca_allocator_bucket_component'
> ../../../opal/.libs/libopen-pal.so: undefined reference to
> `mca_shmem_sysv_component'
> ../../../opal/.libs/libopen-pal.so: undefined reference to
> `mca_pmix_isolated_component'
> ../../../opal/.libs/libopen-pal.so: undefined reference to
> `mca_btl_vader_component'
> ../../../opal/.libs/libopen-pal.so: undefined reference to
> `mca_shmem_mmap_component'
> ../../../opal/.libs/libopen-pal.so: undefined reference to
> `mca_pmix_pmix4x_component'
> ../../../opal/.libs/libopen-pal.so: undefined reference to
> `mca_btl_self_component'
> ../../../opal/.libs/libopen-pal.so: undefined reference to
> `mca_allocator_basic_component'
> ../../../opal/.libs/libopen-pal.so: undefined reference to
> `mca_rcache_grdma_component'
> ../../../opal/.libs/libopen-pal.so: undefined reference to
> `mca_mpool_hugepage_component'
> ../../../opal/.libs/libopen-pal.so: undefined reference to
> `mca_btl_sm_component'
> ../../../opal/.libs/libopen-pal.so: undefined reference to
> `mca_reachable_weighted_component'
> collect2: error: ld returned 1 exit status
> Makefile:1836: recipe for target 'opal_wrapper' failed
Software used:
- automake (GNU automake) 1.15
- m4 (GNU M4) 1.4.18
- autoconf (GNU Autoconf) 2.69
- libtoolize (GNU libtool) 2.4.6
- flex 2.6.1
- gcc (Debian 6.3.0-18+deb9u1) 6.3.0 20170516
- UCT version=1.5.1 revision 7e67a4b
Build process:
> $ git clone … ompi; git checkout $BRANCH
> $ cd ompi
> $ ./autogen.pl &> auto.log
> $ ./configure --prefix=$DIR --disable-timing --disable-mpi-cxx
> --enable-shared --enable-weak-symbols --enable-binaries --enable-mpi
> --enable-mpi-interface-warning --enable-mpi-fortran --enable-c11-atomics
> --enable-builtin-atomics --enable-fast-install --enable-mpi1-compatibility
> --without-cuda --without-verbs --with-ucx=${PATH_TO_UCX} --disable-debug
> --disable-mem-debug &> configure.log
> $ make -j 8 &> make.log
I also tried a serial build to avoid potential races in the build
process but to no avail. The respective log files are attached in
compressed form and, for your convenience, also available online
auto.log -> https://pastebin.com/2w5RDNdc
configure.log -> https://pastebin.com/chWtk4pw
make.log -> https://pastebin.com/kYWscGYD
As a side question: Are there any functionality tests for OpenMPI in the
sense that they check whether communication works properly, i.e. no lost
messages, message contents unchanged, …?
Regards, Jan
ompi-master.tar.bz2
Description: Binary data
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