Hi Knut, Yes. And is it possible to do that APIs?
Thank you. ========================== Isaiah Nyabuto +254729572616 Bsc. Health Records Management and Informatics On Feb 15, 2018 16:29, "Knut Staring" <knu...@gmail.com> wrote: > Hi Isaiah, > > When you say "extract", you mean you want to take metadata from one > instance of DHIS2 and import to another one? That can be done through the > user interface as described in the user manual: > https://docs.dhis2.org/master/en/user/html/import_export.html > https://play.dhis2.org/2.28/dhis-web-importexport/index.action > > You can also load metadata from CSV: > https://docs.dhis2.org/master/en/developer/html/webapi_csv_ > metadata_import.html > > On Thu, Feb 15, 2018 at 7:33 AM, Isaiah Nyabuto <isaiahnyab...@gmail.com> > wrote: > >> Hi Jason, >> >> Thank you. I am going to look into that keenly. >> And If I may ask, is there a way I can extract dhis2 metadata that can be >> imported directly or with minimal transformations? >> >> This will be helpful. Thank you. >> >> ========================== >> Isaiah Nyabuto >> +254729572616 <+254%20729%20572616> >> Bsc. Health Records Management and Informatics >> >> On Feb 15, 2018 15:16, "Jason Pickering" <jason.p.picker...@gmail.com> >> wrote: >> >>> Hi Isaiah, >>> >>> You have >>> >>> >>> "parent":"vpiZlB5cdK7" >>> >>> >>> It should be >>> >>> parent":{"id":"vpiZlB5cdK7"}} >>> >>> Be sure your JSON structure is exactly as it should be, otherwise, you >>> will get those kinds of errors. Study the example here >>> <https://raw.githubusercontent.com/jason-p-pickering/dhis2-data-munging/master/ous/ous.json> >>> . >>> >>> Regards, >>> Jason >>> >>> >>> >>> On Thu, Feb 15, 2018 at 1:07 PM, Isaiah Nyabuto <isaiahnyab...@gmail.com >>> > wrote: >>> >>>> Thank you for the tip. It still doesn't work. >>>> what does this error mean? >>>> >>>> httr::content(r, "text") >>>> >>>> [1] "{\"httpStatus\":\"Internal Server Error\",\"httpStatusCode\":500 >>>> ,\"status\":\"ERROR\",\"message\":\"Can not instantiate value of type >>>> [simple type, class org.hisp.dhis.organisationunit.OrganisationUnit] >>>> from String value ('It7fWcKbcZX'); no single-String constructor/factory >>>> method\\n at [Source: org.apache.catalina.connector. >>>> CoyoteInputStream@1efec811; line: 1, column: 73] (through reference >>>> chain: org.hisp.dhis.organisationunit.OrganisationUnit[\\\"parent\\\ >>>> "])\"}" >>>> >>>> Anyone? >>>> >>>> Thank you. >>>> ========================== >>>> Isaiah Nyabuto >>>> +254729572616 <+254%20729%20572616> >>>> Bsc. Health Records Management and Informatics >>>> >>>> On Feb 15, 2018 13:14, "Jason Pickering" <jason.p.picker...@gmail.com> >>>> wrote: >>>> >>>> All of your fields must have exactly the correct names: >>>> >>>> shortname -> shortName >>>> featuretype-> featureType >>>> >>>> Keep hacking at it! You will get there! >>>> >>>> Regards, >>>> Jason >>>> >>>> >>>> On Thu, Feb 15, 2018 at 11:08 AM, Isaiah Nyabuto < >>>> isaiahnyab...@gmail.com> wrote: >>>> >>>>> Hi Jason, >>>>> >>>>> Here is some bit of my post data. >>>>> >>>>> {"organisationUnits":[{"name":"Wikithuki >>>>> Dispensary","uid":"Bc371uxfYD5","code":"16925","parent":"vpiZlB5cdK7","shortname":"Wikithuki >>>>> >>>>> Dispensary","description":"","comment":"","featuretype":"POINT","coordinates":"[37.95263,-0.77819]","url":""},{"name":"Gemifa >>>>> Medical >>>>> Clinic","uid":"Z7Lf1n3Fcpi","code":"22907","parent":"mEZBjj4fLBT","shortname":"Gemifa","description":"Clinic","comment":"","featuretype":"NONE","coordinates":"[34.391914,0.059575]","url":""},{"name":"Olympus >>>>> Medical >>>>> Clinic","uid":"NAbQdHuaJFK","code":"22906","parent":"PeEcMfBchbr","shortname":"Olympus","description":"Clinic","comment":"","featuretype":"NONE","coordinates":"[34.3994,0.059575]","url":""},{"name":"Masaba >>>>> Community Health >>>>> Unit","uid":"tYwHeLSnHyb","code":"600616","parent":"QR2K4k8VKF1","shortname":"Masaba >>>>> CHU","description":"Community >>>>> Unit","comment":"","featuretype":"NONE","coordinates":"[34.46411,0.19358]","url":""},{"name":"Gatunga >>>>> Health Centre","uid":"cmay4WXRmhA","code":"12034","parent": >>>>> >>>>> >>>>> After changing the "uid" to "id", still it doesn't work. >>>>> >>>>> Thank you >>>>> >>>>> >>>>> On Thu, Feb 15, 2018 at 12:14 PM, Jason Pickering < >>>>> jason.p.picker...@gmail.com> wrote: >>>>> >>>>>> Hi Isaiah, >>>>>> >>>>>> Post a bit of your JSON here from >>>>>> toJSON(list(organisationUnits=new_org), >>>>>> auto_unbox = TRUE) >>>>>> >>>>>> One other problem I noticed as well is this >>>>>> >>>>>> [{"name":"Wikithuki Dispensary","uid":"Bc371uxfYD5" >>>>>> >>>>>> >>>>>> It should be >>>>>> >>>>>> [{"name":"Wikithuki Dispensary","id":"Bc371uxfYD5" >>>>>> >>>>>> >>>>>> Regards, >>>>>> Jason >>>>>> >>>>>> >>>>>> On Thu, Feb 15, 2018 at 10:01 AM, Isaiah Nyabuto < >>>>>> isaiahnyab...@gmail.com> wrote: >>>>>> >>>>>>> Hi Jason, >>>>>>> >>>>>>> I get an internal server error code: 500, after trying that. Here is >>>>>>> the response; >>>>>>> >>>>>>> httr::content(r, "text")[1] "{\"httpStatus\":\"Internal Server >>>>>>> Error\",\"httpStatusCode\":500,\"status\":\"ERROR\",\"message\":\"Can >>>>>>> not instantiate value of type [simple type, class >>>>>>> org.hisp.dhis.organisationunit.OrganisationUnit] from String value >>>>>>> ('It7fWcKbcZX'); no single-String constructor/factory method\\n at >>>>>>> [Source: org.apache.catalina.connector.CoyoteInputStream@1efec811; >>>>>>> line: 1, column: 73] (through reference chain: >>>>>>> org.hisp.dhis.organisationunit.OrganisationUnit[\\\"parent\\\"])\"}" >>>>>>> >>>>>>> >>>>>>> Thank you. >>>>>>> >>>>>>> On Thu, Feb 15, 2018 at 10:36 AM, Jason Pickering < >>>>>>> jason.p.picker...@gmail.com> wrote: >>>>>>> >>>>>>>> Hi Isiah, >>>>>>>> >>>>>>>> The reason for it not working (at least at first glance) is that >>>>>>>> you are posing to the /api/metadata endpoint. Thus, you need to tell >>>>>>>> the >>>>>>>> server what you are trying to import. In this case, its organisation >>>>>>>> units. >>>>>>>> >>>>>>>> I think changing this to >>>>>>>> >>>>>>>> r <- POST(url, authenticate(dest.user, dest.pass), >>>>>>>> body = toJSON(list(organisationUnits=new_org), >>>>>>>> auto_unbox = TRUE), >>>>>>>> content_type_json()) >>>>>>>> >>>>>>>> should work. >>>>>>>> >>>>>>>> The example works because the file >>>>>>>> <https://raw.githubusercontent.com/jason-p-pickering/dhis2-data-munging/master/ous/ous.json> >>>>>>>> looks like this: >>>>>>>> >>>>>>>> >>>>>>>> {"created":"2016-08-10","organisationUnits":[{"id":"u6yjgvIMzKn",... >>>>>>>> >>>>>>>> >>>>>>>> Hope this helps and best regards, >>>>>>>> >>>>>>>> Jason >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> On Thu, Feb 15, 2018 at 6:34 AM, Isaiah Nyabuto < >>>>>>>> isaiahnyab...@gmail.com> wrote: >>>>>>>> >>>>>>>>> >>>>>>>>> Dear Jason and Dhis2 Community, >>>>>>>>> >>>>>>>>> I am following your guide on bootstrapping >>>>>>>>> <https://github.com/jason-p-pickering/dhis2-data-munging/blob/master/bootstrap/bootstrap.Rmd> >>>>>>>>> dhis2 with R while trying to import metadata using the API. >>>>>>>>> >>>>>>>>> I do not understand why my metadata is not imported. Here are my >>>>>>>>> steps, any help will be appreciated. >>>>>>>>> >>>>>>>>> >>>>>>>>> head(org) name uid code >>>>>>>>> parent shortname >>>>>>>>> 1 Wikithuki Dispensary Bc371uxfYD5 16925 vpiZlB5cdK7 >>>>>>>>> Wikithuki Dispensary >>>>>>>>> 2 Gemifa Medical Clinic Z7Lf1n3Fcpi 22907 mEZBjj4fLBT >>>>>>>>> Gemifa >>>>>>>>> 3 Olympus Medical Clinic NAbQdHuaJFK 22906 PeEcMfBchbr >>>>>>>>> Olympus >>>>>>>>> 4 Masaba Community Health Unit tYwHeLSnHyb 600616 QR2K4k8VKF1 >>>>>>>>> Masaba CHU >>>>>>>>> 5 Gatunga Health Centre cmay4WXRmhA 12034 IcAegRcGuV6 Gatunga >>>>>>>>> Health Centre >>>>>>>>> 6 Cfw Kimangaru Clinic E52UsoBxJVS 11966 vEAFtHnPDrX CFW >>>>>>>>> Kimangaru Clinic >>>>>>>>> description openingdate closedate comment featuretype >>>>>>>>> coordinates url >>>>>>>>> 1 NA NA POINT >>>>>>>>> [37.95263,-0.77819] >>>>>>>>> 2 Clinic NA NA NONE >>>>>>>>> [34.391914,0.059575] >>>>>>>>> 3 Clinic NA NA NONE >>>>>>>>> [34.3994,0.059575] >>>>>>>>> 4 Community Unit NA NA NONE >>>>>>>>> [34.46411,0.19358] >>>>>>>>> 5 NA NA POINT >>>>>>>>> [37.9423,-0.29656] >>>>>>>>> 6 NA NA POINT >>>>>>>>> [37.53009,-0.54506] >>>>>>>>> contactperson address email phonenumber >>>>>>>>> 1 NA NA NA NA >>>>>>>>> 2 NA NA NA NA >>>>>>>>> 3 NA NA NA NA >>>>>>>>> 4 NA NA NA NA >>>>>>>>> 5 NA NA NA NA >>>>>>>>> 6 NA NA NA NA >>>>>>>>> >>>>>>>>> >>>>>>>>> I followed the following steps to prepare my df for import. >>>>>>>>> 1. Removed all the NAs and columns with entire NAs. >>>>>>>>> >>>>>>>>> head(new_org) name uid code >>>>>>>>> parent shortname >>>>>>>>> 1 Wikithuki Dispensary Bc371uxfYD5 16925 vpiZlB5cdK7 >>>>>>>>> Wikithuki Dispensary >>>>>>>>> 2 Gemifa Medical Clinic Z7Lf1n3Fcpi 22907 mEZBjj4fLBT >>>>>>>>> Gemifa >>>>>>>>> 3 Olympus Medical Clinic NAbQdHuaJFK 22906 PeEcMfBchbr >>>>>>>>> Olympus >>>>>>>>> 4 Masaba Community Health Unit tYwHeLSnHyb 600616 QR2K4k8VKF1 >>>>>>>>> Masaba CHU >>>>>>>>> 5 Gatunga Health Centre cmay4WXRmhA 12034 IcAegRcGuV6 Gatunga >>>>>>>>> Health Centre >>>>>>>>> 6 Cfw Kimangaru Clinic E52UsoBxJVS 11966 vEAFtHnPDrX CFW >>>>>>>>> Kimangaru Clinic >>>>>>>>> description comment featuretype coordinates url >>>>>>>>> 1 POINT [37.95263,-0.77819] >>>>>>>>> 2 Clinic NONE [34.391914,0.059575] >>>>>>>>> 3 Clinic NONE [34.3994,0.059575] >>>>>>>>> 4 Community Unit NONE [34.46411,0.19358] >>>>>>>>> 5 POINT [37.9423,-0.29656] >>>>>>>>> 6 POINT [37.53009,-0.54506] >>>>>>>>> >>>>>>>>> >>>>>>>>> 3. Then post the data as follows. >>>>>>>>> >>>>>>>>> dest.url <- "http://localhost/dhis/"; >>>>>>>>> url <- paste0(dest.url, "api/metadata?importStrategy=C >>>>>>>>> REATE&atomicMode=NONE") >>>>>>>>> r <- POST(url, authenticate(dest.user, dest.pass), >>>>>>>>> body = toJSON(new_org, auto_unbox = TRUE), >>>>>>>>> content_type_json()) >>>>>>>>> assertthat::assert_that(r$status_code==200) >>>>>>>>> >>>>>>>>> 4. The body looks like. >>>>>>>>> >>>>>>>>> jsonlite::toJSON(me, auto_unbox = TRUE)[{"name":"Wikithuki >>>>>>>>> Dispensary","uid":"Bc371uxfYD5","code":"16925","parent":"vpiZlB5cdK7","shortname":"Wikithuki >>>>>>>>> >>>>>>>>> Dispensary","description":"","comment":"","featuretype":"POINT","coordinates":"[37.95263,-0.77819]","url":""},{"name":"Gemifa >>>>>>>>> Medical >>>>>>>>> Clinic","uid":"Z7Lf1n3Fcpi","code":"22907","parent":"mEZBjj4fLBT","shortname":"Gemifa","description":"Clinic","comment":"","featuretype":"NONE","coordinates":"[34.391914,0.059575]","url":""},{"name":"Olympus >>>>>>>>> Medical >>>>>>>>> Clinic","uid":"NAbQdHuaJFK","code":"22906","parent":"PeEcMfBchbr","shortname":"Olympus","description":"Clinic","comment":"","featuretype":"NONE","coordinates":"[34.3994,0.059575]","url":""},{"name":"Masaba >>>>>>>>> Community Health >>>>>>>>> Unit","uid":"tYwHeLSnHyb","code":"600616","parent":"QR2K4k8VKF1","shortname":"Masaba >>>>>>>>> CHU","description":"Community >>>>>>>>> Unit","comment":"","featuretype":"NONE","coordinates":"[34.46411,0.19358]","url":""},{"name":"Gatunga >>>>>>>>> Health >>>>>>>>> Centre","uid":"cmay4WXRmhA","code":"12034","parent":"IcAegRcGuV6","shortname":"Gatunga >>>>>>>>> Health >>>>>>>>> Centre","description":"","comment":"","featuretype":"POINT","coordinates":"[37.9423,-0.29656]","url":""},{"name":"Cfw >>>>>>>>> Kimangaru >>>>>>>>> Clinic","uid":"E52UsoBxJVS","code":"11966","parent":"vEAFtHnPDrX","shortname":"CFW >>>>>>>>> Kimangaru >>>>>>>>> Clinic","description":"","comment":"","featuretype":"POINT","coordinates":"[37.53009,-0.54506]","url":""}] >>>>>>>>> >>>>>>>>> >>>>>>>>> What could be the problem there? I get status 200 and still it >>>>>>>>> doesn't import. >>>>>>>>> >>>>>>>>> >>>>>>>>> Thank you >>>>>>>>> >>>>>>>>> >>>>>>>>> -- >>>>>>>>> ------------------------------------------------------------ >>>>>>>>> -------------------- >>>>>>>>> Isaiah Nyabuto >>>>>>>>> +254 729 572 616 >>>>>>>>> Bsc. Health Records Management & Informatics, JKUAT. >>>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> -- >>>>>>>> Jason P. Pickering >>>>>>>> email: jason.p.picker...@gmail.com >>>>>>>> tel:+46764147049 <076-414%2070%2049> >>>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> -- >>>>>>> ------------------------------------------------------------ >>>>>>> -------------------- >>>>>>> Isaiah Nyabuto >>>>>>> +254 729 572 616 >>>>>>> Bsc. Health Records Management & Informatics, JKUAT. >>>>>>> >>>>>> >>>>>> >>>>>> >>>>>> -- >>>>>> Jason P. Pickering >>>>>> email: jason.p.picker...@gmail.com >>>>>> tel:+46764147049 <076-414%2070%2049> >>>>>> >>>>> >>>>> >>>>> >>>>> -- >>>>> ------------------------------------------------------------ >>>>> -------------------- >>>>> Isaiah Nyabuto >>>>> +254 729 572 616 >>>>> Bsc. Health Records Management & Informatics, JKUAT. >>>>> >>>> >>>> >>>> >>>> -- >>>> Jason P. Pickering >>>> email: jason.p.picker...@gmail.com >>>> tel:+46764147049 <076-414%2070%2049> >>>> >>>> >>>> >>> >>> >>> -- >>> Jason P. Pickering >>> email: jason.p.picker...@gmail.com >>> tel:+46764147049 <+46%2076%20414%2070%2049> >>> >> >> _______________________________________________ >> Mailing list: https://launchpad.net/~dhis2-users >> Post to : dhis2-users@lists.launchpad.net >> Unsubscribe : https://launchpad.net/~dhis2-users >> More help : https://help.launchpad.net/ListHelp >> >> > > > -- > Knut Staring > > Department of Information, Evidence and Research > World Health Organization, Geneva, Switzerland > Office: +41 22 791 3683 Mob1: +33 6 4434 2931 Mob2: +47 9188 0522 > Skype: knutstar >
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