On Wednesday, 6 February 2013 at 13:20:58 UTC, bioinfornatics
wrote:
i use both gdc / ldc with "-w -O -release" flags
writeln inside loop is never evaluated as computeLocal boolean
is always false
Thanks in any case i continue to read all your answer :-)
just to add more information about fastq
http://www.biomedsearch.com/nih/Sanger-FASTQ-file-format-sequences/20015970.html
And here a set of fastq where parser should success or fail
http://www.biomedsearch.com/attachments/00/20/01/59/20015970/gkp1137_nar-02248-d-2009-File005.gz
The problem is a sequence line could be splitted in several line
same for quality line. And if i think it should allow to have in
this lines white space
the @ is used to identify a identifier line
the + is used to identify a description line
but this char could appear as a quality value (ubyte)
I agree the spec format is really bad but it is heavily used in
biology so i would like a fast parser to develop some D
application instead to use C++.
I will try later all previous recommendation thank to all.
It seem in any case is not easy to parse fastly a file in D
Note: is possible to lock a file? to able to use pure method ?
