Hi Carlos, For the carpentries blog post, that would be great. Please open a PR on this repo: http://github.com/carpentries/carpentries.org/
Best, -- François On Mon, Aug 20, 2018 at 11:03 AM Carlos Martinez Ortiz <c.marti...@esciencecenter.nl> wrote: > > Hi all, > > > I've written it into more of a blog post format: > > > https://medium.com/@c.martinez/software-carpentry-and-image-processing-5727d2347de2 > > > Would everybody be ok for me to posting this on the eScience center blog > (https://blog.esciencecenter.nl/)? And maybe cross posting on the carpentries > blog ? > > > Cheers, > > Carlos > > ________________________________ > From: Tim McNamara <paperl...@timmcnamara.co.nz> > Sent: 16 August 2018 01:39:57 > To: discuss > Subject: Re: [discuss] Image processing with Python > > Feel free to harvest the source of this file if anyone would like to publish > something in a more visible location: > > https://git.nzoss.org.nz/tim-mcnamara/notebook/blob/master/image-processing-tutorials.md > > Tim McNamara > https://tim.mcnamara.nz | @timClicks > > > On 16 August 2018 at 11:04, Steven Haddock <hadd...@mbari.org> wrote: > > Maybe someone could collate this info into a blog post to preserve? > > -Steve > > > > On Aug 15, 2018, at 12:16 , Pablo Hernandez via discuss > > <discuss@lists.carpentries.org> wrote: > > > > Hello all, such a good collection of resources! > > > > I would like to add the effort of the image analysis library Insight > > ToolKit (ITK) to quickly create 3D visualizations in the web and/or with > > jupyter notebooks. > > > > They are not in a lesson format, but it is promising! > > > > Here is a mybinder with all the dependencies installed: > > > > > > https://mybinder.org/v2/gh/InsightSoftwareConsortium/itk-jupyter-widgets/master?filepath=examples%2F3DImage.ipynb > > > > > > https://mybinder.org/v2/gh/InsightSoftwareConsortium/itk-jupyter-widgets/master?filepath=examples/SpecifyAColormap.ipynb > > > > > > https://mybinder.org/v2/gh/InsightSoftwareConsortium/itk-jupyter-widgets/master?filepath=examples/SelectRegionOfInterest.ipynb > > > > Based on this repo: > > https://github.com/InsightSoftwareConsortium/itk-jupyter-widgets > > > > There is also a course of Biomedical Image Analysis and Visualization: > > https://github.com/KitwareMedical/2018-05-30-KRSCourseInBiomedicalImageAnalysisAndVisualization > > > > If the user is running the notebooks locally, instead of in mybinder, we > > just need: > > `pip install --user itkwidgets` > > > > Best regards, > > Pablo > > > > > > On Wed, Aug 15, 2018 at 12:59 PM, mbgoodman via discuss > > <discuss@lists.carpentries.org> wrote: > > Hello all, > > I am sorry I missed this thread in May. As Amy Hodge noted, we have been > > developing image processing lessons at Stanford. The first iteration was > > held in 2017 and was built by a team of Stanford grad students mentored by > > Greg Wilson. We are in the midst of updating four lessons for the next > > iteration, to be held in 2018. I need to check in with the current TA team > > about updates, but initial github repo is here: > > https://github.com/DataLucence/images > > > > I am digesting all of the other resources noted in this thread over the > > next 6 weeks. > > > > -Miriam Goodman > > > > The Carpentries / discuss / see discussions + participants + delivery > > options Permalink > > > The Carpentries / discuss / see discussions + participants + delivery options > Permalink ------------------------------------------ The Carpentries: discuss Permalink: https://carpentries.topicbox.com/groups/discuss/T4240adcd25206bde-M10cdc3bad420f30bda31db60 Delivery options: https://carpentries.topicbox.com/groups/discuss/subscription
