Hello all, such a good collection of resources! I would like to add the effort of the image analysis library Insight ToolKit (ITK) to quickly create 3D visualizations in the web and/or with jupyter notebooks.
They are not in a lesson format, but it is promising! Here is a mybinder with all the dependencies installed: https://mybinder.org/v2/gh/InsightSoftwareConsortium/itk- jupyter-widgets/master?filepath=examples%2F3DImage.ipynb https://mybinder.org/v2/gh/InsightSoftwareConsortium/itk- jupyter-widgets/master?filepath=examples/SpecifyAColormap.ipynb https://mybinder.org/v2/gh/InsightSoftwareConsortium/itk- jupyter-widgets/master?filepath=examples/SelectRegionOfInterest.ipynb Based on this repo: https://github.com/InsightSoftwareConsortium/itk- jupyter-widgets There is also a course of Biomedical Image Analysis and Visualization: https://github.com/KitwareMedical/2018-05-30-KRSCourseInBiomedicalImageAnal ysisAndVisualization If the user is running the notebooks locally, instead of in mybinder, we just need: `pip install --user itkwidgets` Best regards, Pablo On Wed, Aug 15, 2018 at 12:59 PM, mbgoodman via discuss < discuss@lists.carpentries.org> wrote: > Hello all, > I am sorry I missed this thread in May. As Amy Hodge noted, we have been > developing image processing lessons at Stanford. The first iteration was > held in 2017 and was built by a team of Stanford grad students mentored by > Greg Wilson. We are in the midst of updating four lessons for the next > iteration, to be held in 2018. I need to check in with the current TA team > about updates, but initial github repo is here: > https://github.com/DataLucence/images > > I am digesting all of the other resources noted in this thread over the > next 6 weeks. > > -Miriam Goodman > *The Carpentries <https://carpentries.topicbox.com/latest>* / discuss / > see discussions <https://carpentries.topicbox.com/groups/discuss> + > participants <https://carpentries.topicbox.com/groups/discuss/members> + > delivery > options <https://carpentries.topicbox.com/groups/discuss/subscription> > Permalink > <https://carpentries.topicbox.com/groups/discuss/T4240adcd25206bde-M2456910eb40b374c84b66a74> > ------------------------------------------ The Carpentries: discuss Permalink: https://carpentries.topicbox.com/groups/discuss/T4240adcd25206bde-M716feea3ebbfa50fdde17014 Delivery options: https://carpentries.topicbox.com/groups/discuss/subscription
