Hi Deb, Holly Bik and I ran a workshop recently (first in a series of three) that focused on building viz implementations that Just Work (because they’re on binder) — check ‘em out!
https://speeding-up-science-workshops.github.io/speeding-up-science/ Some examples: https://speeding-up-science-workshops.github.io/speeding-up-science/initial-viz-barcoding/ code https://github.com/janelucas/NMDS https://speeding-up-science-workshops.github.io/speeding-up-science/mag-stats/ https://github.com/housw/MAGstats-binder best, —titus > On May 15, 2019, at 10:08 AM, Deborah Paul <[email protected]> wrote: > > Yes Marianne, > > You did get the scope. I'm thinking of ways in which we can promote / develop > tools that make visual data exploration easier / and more accessible. Not > even necessarily "analysis", but more like "discovery." > > Perhaps a new thread if others want to discuss. > Deb > > On 2019-05-15 10:19 AM, Marianne Corvellec wrote: >> Hi Deb, >> >> Yes, maybe we should start a new thread, if you want to discuss data >> visualization in the context of exploratory data analysis (EDA). >> >> Of course, you may personally (or, as an organization, internally) want to >> make your EDA reproducible. Then, you may have many many (versioned) >> notebooks containing many many statistical summaries, plots, and lines of >> code which don't end up in (or even relate to) the final "publication" >> (paper, web app, or anything in between). >> >> But if we are talking about reproducible research, I can't see any >> reproducibility requirement pertaining to the visualization tools which were >> used, at some point and by someone, and led, directly or indirectly, to the >> insights which motivated a given study. You want the actual study to be >> reproducible. >> >> Did I get the "scope" of your question? ;) >> >> Best, >> Marianne >> >> On May 15, 2019 3:52 PM, "Deborah Paul" <[email protected]> wrote: >> Hi All, >> Perhaps off-topic (sorry), but then if what Marianne has out-lined here >> represents the "scope" of this Visualization as part of Reproducibility >> effort, >> >> >> On 2019-05-15 9:11 AM, Marianne Corvellec wrote: >> > I get that Visualisation only refers to a means of communicating >> > results (and not to a means of exploring data). >> Where do Visualization tools that help us explore data, fit in? We need >> these. >> >> Thanks, >> Deb >> >> -- >> -- Upcoming iDigBio Events https://www.idigbio.org/calendar >> -- Deborah Paul, iDigBio Digitization and Workforce Training Specialist >> iDigBio -- Steering Committee Member >> SPNHC Liaison, Member-At-Large and Member International Relations Committee >> SYNTHESYS3 Representative, ICEDIG External Advisory Board Member >> Vice Chair, Biodiversity Information Standards Organisation (TDWG)(2019-2020) >> Institute for Digital Information, 234 LSB >> Florida State University >> Tallahassee, Florida 32306 >> 850-644-6366 >> > > -- > -- Upcoming iDigBio Events > https://www.idigbio.org/calendar > > -- Deborah Paul, iDigBio Digitization and Workforce Training Specialist > iDigBio -- Steering Committee Member > SPNHC Liaison, Member-At-Large and Member International Relations Committee > SYNTHESYS3 Representative, ICEDIG External Advisory Board Member > Vice Chair, Biodiversity Information Standards Organisation (TDWG)(2019-2020) > Institute for Digital Information, 234 LSB > Florida State University > Tallahassee, Florida 32306 > 850-644-6366 > > The Carpentries / discuss / see discussions + participants + delivery options > Permalink ------------------------------------------ The Carpentries: discuss Permalink: https://carpentries.topicbox.com/groups/discuss/Te318e99849383453-M72eb307942513f41d57e94aa Delivery options: https://carpentries.topicbox.com/groups/discuss/subscription
