On Thu, Aug 19, 2010 at 04:39:11PM -0400, Paul Barbone wrote: > Paul Barbone wrote: > >Anders Logg wrote: > >>On Thu, Aug 19, 2010 at 03:48:12PM -0400, Paul Barbone wrote: > >>>Anders Logg wrote: > >>>>On Thu, Aug 19, 2010 at 02:46:47PM -0400, Paul Barbone wrote: > >>>>>Anders Logg wrote: > >>>>>>On Thu, Aug 19, 2010 at 07:03:51PM +0100, Garth N. Wells wrote: > >>>>>>>On Thu, 2010-08-19 at 17:58 +0000, [email protected] wrote: > >>>>>>>>------------------------------------------------------------ > >>>>>>>>revno: 390 > >>>>>>>>committer: Anders Logg <[email protected]> > >>>>>>>>branch nick: dorsal > >>>>>>>>timestamp: Thu 2010-08-19 19:55:20 +0200 > >>>>>>>>message: > >>>>>>>>Remove hypre, scalapack and blacs from petsc.package for now, > >>>>>>>>not working on this shitty OS becuase of Fortran issues. > >>>>>>>They're nice to have - can you just install a Fortran compiler? > >>>>>>> > >>>>>>>Garth > >>>>>>I tried installing g95 from macports but it just hung. But even if I > >>>>>>do that, I probably need to build MPI with Fortran support which > >>>>>>probably will lead to new problems. > >>>>>> > >>>>>>Has anyone tried getting PETSc with Fortfran (for Hypre) > >>>>>>to work on OS > >>>>>>X? > >>>>>> > >>>>>>If we can't get it to work, we'll configure it so that a OS X gets a > >>>>>>stripped down version and the rest of us can enjoy a full-featured > >>>>>>PETSc. > >>>>>> > >>>>>> > >>>>>Maybe.... With Garth's recent changes, dolfin just compiled on my > >>>>>leopard system. (Thanks Garth!) Still working through the rest of > >>>>>the packages... > >>>>> > >>>>>About petsc: I'm not sure what you mean by "work", but if "work" > >>>>>means "compile", then yes. With... > >>>>> > >>>>>export CC=gcc-mp-4.4 > >>>>>export CXX=g++-mp-4.4 > >>>>> > >>>>>...defined in the *.platform file. As I'm not yet in a position to > >>>>>test, I can't tell if it "works". > >>>>> > >>>>>-Paul > >>>>Don't you need MPI compilers? > >>>> > >>>>Are you using -download-hypre=1? > >>>> > >>>>That fails for me since Hypre requires that MPI was compiled with > >>>>Fortran support. Did you compile MPI yourself? > >>>> > >>>So, take whatever I tell you with a pinch of salt, because I don't > >>>quite know what I'm doing. Having said that, the following > >>>*.platform file using stable_build=false "installed" and eventually > >>>gave the message: > >>> > >>>--------------------------------------------------------- > >>>DOLFIN successfully compiled and installed in > >>> > >>> /Users/barbone/Research/Computation/FEniCS/ > >>> > >>>--------------------------------------------------------- > >>> > >>>I have yet to test it... > >>> > >>>Here's the *.platform file that I used on my leopard system: (Note > >>>the ugly hardwired ARMADILLO_DIR setting.) > >>> > >>>--------------------------------------------------------- > >>> > >>># Mac OS X 10.5 with MacPorts > >>> > >>># This build script assumes that you have installed Xcode.app and > >>># X11.app from Mac OS's original install disc. This gives you access > >>># to a recent gcc, among other things. In order to have easy access to > >>># a lot of useful Free Software, this script also assumes you have > >>># installed MacPorts (from http://www.macports.org/). > >>># > >>># Via Macports, you need to install the following packages: > >>># > >>># sudo port install wget autogen readline pkgconfig libxml2 libtool \ > >>># cgal gmp zlib python26 swig-python py26-numpy bzr bzrtools git-core \ > >>># scons ginac boost +python26 vtk-devel +python26 suitesparse \ > >>># py26-scientific > >>># > >>># Before proceeding, you need to make sure that Python 2.6 installed > >>># by MacPorts is the default one on your machine: > >>># > >>># sudo port install python_select # sudo python_select python26 > >>># > >>>## > >>> > >>> > >>># Platform specific variables > >>>default PETSC_ARCH=darwin9.2.0-cxx-opt > >>>default GMP_ARCH=none-apple-darwin > >>># default SCOTCH_ARCH=i686_mac_darwin8 > >>># default UMFPACK_DIR=/sw > >>># default BOOST_DIR=/sw > >>> > >>># default PETSC_ARCH=darwin10.0.0-cxx-opt > >>>default SCOTCH_ARCH=i686_mac_darwin8 > >>>default BOOST_DIR=/opt/local > >>>default UMFPACK_DIR=/opt/local > >>>default CGAL_DIR=/opt/local > >>>default GMP_DIR=/opt/local > >>># PEB ADDED - SYSTEM SPECIFIC: > >>># default ARMADILLO_DIR=/opt/local > >>>default ARMADILLO_DIR=/Users/barbone/Research/Computation/FEniCS > >>># END PEB ADDED----------------------------------------- > >>> > >>> > >>># export CC=gcc-4 > >>># export CXX=g++4 > >>>export CC=gcc-mp-4.4 > >>>export CXX=g++-mp-4.4 > >>> > >>> > >>>export PKG_CONFIG_PATH=/opt/local/lib/pkgconfig:${PKG_CONFIG_PATH} > >>># export PKG_CONFIG_PATH=/sw/lib/pkgconfig > >>> > >>> > >>># Define the packages this platform needs (for 10.5 ?) > >>>PACKAGES=( > >>>petsc > >>>slepc > >>>armadillo > >>>mtl > >>>fiat > >>>ferari > >>>ufc > >>>ufl > >>>ffc > >>>viper > >>>instant > >>>dolfin > >>>) > >>> > >>>--------------------------------------------------------- > >>> > >>> > >>> > >> > >>What's in your petsc.package? Which options does it use for PETSc? > >> > >> > > > >No hypre, apparently. Here it is: > > > > > >NAME=petsc-3.0.0-p12 > >SOURCE=http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/ > >PACKING=.tar.gz > >BUILDCHAIN=autotools > > > >package_specific_setup () { > > export PETSC_DIR=${PWD} > > ./config/configure.py COPTFLAGS=-O3 --with-debugging=0 > >--with-shared=1 --with-clanguage > >=cxx --download-umfpack=1 --prefix=${INSTALL_PATH} > >} > > > >package_specific_install () { > > if [ -e ${INSTALL_PATH}/lib/${PETSC_ARCH} ] > > then > > ln -sf ${INSTALL_PATH}/lib/${PETSC_ARCH}/* ${INSTALL_PATH}/lib/ > > fi > >} > > > >package_specific_register () { > > export PETSC_DIR=${INSTALL_PATH} > > export PETSC_ARCH_TEMP=${PETSC_ARCH} > > unset PETSC_ARCH > >} > > > > > > Seems to be working :-)... Again, this is on leopard (10.5), not > snowleopard (10.6). I had to add to dolfin.conf the line: > > export BOOST_DIR=/opt/local > > Afterward, it seemed to run ok. I've tried only Poisson and > nonlinear poisson so far, and only through python. The 'q' didn't > work on the interactive graphics, but I can live with that... :-) > > Thanks Garth and Harish for endless patience. Anders - let me know > if I can provide more info... > > Note that my installation doesn't use scotch, swiginac, trilinos, or > syfi.
Good to hear! If you want, you could experiment with adding --download-hypre=1 in the petsc.package file. I assume you will run into the same problem that I couldn't solve (needing to get an MPI build with Fortran). Let me know if/how it works. -- Anders
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