On 9/1/10 12:02 PM, Harish Narayanan wrote: > On 9/1/10 2:44 AM, Marie Rognes wrote: >> On 31. aug. 2010 22:56, Anders Logg wrote: >>> On Tue, Aug 31, 2010 at 04:28:32PM +0200, Marie Rognes wrote: >>> >>>> On 31. aug. 2010 16:22, Johannes Ring wrote: >>>> >>>>> On Tue, Aug 31, 2010 at 4:13 PM, Marie Rognes <[email protected]> wrote: >>>>> >>>>> >>>>>> I having some issues with PETSc (surprise) as of today. >>>>>> >>>>>> Dorsal tells me that (full log attached): >>>>>> >>>>>> [\snip] >>>>>> >>>>>> -- The following optional packages were found: >>>>>> -- (OK) MPI >>>>>> -- (OK) PETSC >>>>>> -- (OK) SLEPC >>>>>> -- (OK) UMFPACK >>>>>> >>>>>> [\snap] >>>>>> >>>>>> But: >>>>>> >>>>>> >>>>>> >>>>>>>>> from dolfin import * >>>>>>>>> has_la_backend("PETSc") >>>>>>>>> >>>>>>>>> >>>>>> False >>>>>> >>>>>> >>>>>>>>> A = PETScMatrix() >>>>>>>>> >>>>>>>>> >>>>>> Traceback (most recent call last): >>>>>> File "<stdin>", line 1, in <module> >>>>>> NameError: name 'PETScMatrix' is not defined >>>>>> >>>>>> >>>>>>>>> >>>>>> Help? >>>>>> >>>>>> >>>>> There is no -DHAS_PETSC in your log. Try to clean up/remove the >>>>> dorsal_build_dir inside the DOLFIN source directory. >>>>> >>>> >>>> Removed. Check. >>>> >>>> >>>> >>>>> Then rerun Dorsal >>>>> and see if the PETSc test passes. >>>>> >>>>> >>>> -- The following optional packages were found: >>>> -- (OK) MPI >>>> -- (OK) PETSC >>>> -- (OK) SLEPC >>>> -- (OK) UMFPACK >>>> -- (OK) PARMETIS >>>> -- (OK) GMP >>>> -- (OK) CGAL >>>> -- (OK) ZLIB >>>> -- (OK) PYTHON >>>> -- The following optional packages could not be found: >>>> -- (**) TRILINOS >>>> -- (**) MTL4 >>>> -- (**) CHOLMOD >>>> -- (**) SCOTCH >>>> -- Configuring done >>>> -- Generating done >>>> -- Build files have been written to: >>>> /home/meg/local/dorsal_downloads/dolfin >>>> make: *** No rule to make target `install'. Stop. >>>> Failure with exit status: 2 >>>> Exit message: There was a problem building dolfin. >>>> >>> I had the same problem (I think). It turned out to be a problem with my >>> PETSC_ARCH variable which was set to linux-gnu-c-opt instead of >>> linux-gnu-cxx-opt. >>> >>> >> >> Doesn't solve the problem for me :( >> >> - My PETSC_ARCH is set to linux-gnu-cxx-opt (cf gentoo.platform) >> - cmake reports: -- PETSC_ARCH is linux-gnu-cxx-opt >> - Still get same problem. >> >>> I think this changed in Dorsal at some point recently. >>> >>> >> >> Everything updated as of 20 seconds ago ... > > I too am now seeing strange things such as this: > > > . > . > . > > -- PETSC_DIR is /Users/harish/Work/FEniCS/dev/src/petsc-3.1-p4 > -- PETSC_ARCH is darwin10.0.0-cxx-opt > -- Found petscconf.h > -- PETSc test failed > -- PETSc could not be found. Be sure to set PETSC_DIR and PETSC_ARCH. > (missing: PETSC_TEST_RUNS) > > . > . > . > > -- (OK) MPI > -- (OK) MTL4 > -- (OK) UMFPACK > -- (OK) CHOLMOD > -- (OK) SCOTCH > -- (OK) PARMETIS > -- (OK) GMP > -- (OK) CGAL > -- (OK) ZLIB > -- (OK) PYTHON > -- The following optional packages could not be found: > -- (**) PETSC > -- (**) SLEPC > -- (**) TRILINOS
Following which (and independently), CMake fails catastrophically: Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o [ 1%] cd /foo/dolfin/dorsal_build_dir/dolfin && /opt/local/bin/c++ -Ddolfin_EXPORTS -DPACKAGE_VERSION=\"0.9.8\" -DBOOST_UBLAS_NDEBUG -DHAS_MTL4 -DMTL_HAS_BLAS -DHAS_UMFPACK -DHAS_CHOLMOD -DHAS_SCOTCH -DHAS_PARMETIS -DHAS_CGAL -DHAS_GMP -DHAS_ZLIB -DHAS_CPPUNIT -DHAS_MPI -DMPICH_IGNORE_CXX_SEEK -frounding-math;-D_REENTRANT -O2 -g -fPIC -I/foo/dolfin -I/opt/local/include/libxml2 -I/Users/harish/Work/FEniCS/dev/include -I/opt/local/include -I/Users/harish/Work/FEniCS/dev/src/mtl4 -I/opt/local/include/ufsparse -I/opt/local/include/cppunit -o CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o -c /foo/dolfin/dolfin/ale/HarmonicSmoothing.cpp i686-apple-darwin10-g++-4.2.1: no input files i686-apple-darwin10-g++-4.2.1: no input files Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/TransfiniteInterpolation.cpp.o cd /foo/dolfin/dorsal_build_dir/dolfin && /opt/local/bin/c++ -Ddolfin_EXPORTS -DPACKAGE_VERSION=\"0.9.8\" -DBOOST_UBLAS_NDEBUG -DHAS_MTL4 -DMTL_HAS_BLAS -DHAS_UMFPACK -DHAS_CHOLMOD -DHAS_SCOTCH -DHAS_PARMETIS -DHAS_CGAL -DHAS_GMP -DHAS_ZLIB -DHAS_CPPUNIT -DHAS_MPI -DMPICH_IGNORE_CXX_SEEK -frounding-math;-D_REENTRANT -O2 -g -fPIC -I/foo/dolfin -I/opt/local/include/libxml2 -I/Users/harish/Work/FEniCS/dev/include -I/opt/local/include -I/Users/harish/Work/FEniCS/dev/src/mtl4 -I/opt/local/include/ufsparse -I/opt/local/include/cppunit -o CMakeFiles/dolfin.dir/ale/TransfiniteInterpolation.cpp.o -c /foo/dolfin/dolfin/ale/TransfiniteInterpolation.cpp Building CXX object dolfin/CMakeFiles/dolfin.dir/common/real.cpp.o /bin/sh: -D_REENTRANT: command not found /bin/sh: -D_REENTRANT: command not found cd /foo/dolfin/dorsal_build_dir/dolfin && /opt/local/bin/c++ -Ddolfin_EXPORTS -DPACKAGE_VERSION=\"0.9.8\" -DBOOST_UBLAS_NDEBUG -DHAS_MTL4 -DMTL_HAS_BLAS -DHAS_UMFPACK -DHAS_CHOLMOD -DHAS_SCOTCH -DHAS_PARMETIS -DHAS_CGAL -DHAS_GMP -DHAS_ZLIB -DHAS_CPPUNIT -DHAS_MPI -DMPICH_IGNORE_CXX_SEEK -frounding-math;-D_REENTRANT -O2 -g -fPIC -I/foo/dolfin -I/opt/local/include/libxml2 -I/Users/harish/Work/FEniCS/dev/include -I/opt/local/include -I/Users/harish/Work/FEniCS/dev/src/mtl4 -I/opt/local/include/ufsparse -I/opt/local/include/cppunit -o CMakeFiles/dolfin.dir/common/real.cpp.o -c /foo/dolfin/dolfin/common/real.cpp make[2]: *** [dolfin/CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o] Error 127 make[2]: *** Waiting for unfinished jobs.... make[2]: *** [dolfin/CMakeFiles/dolfin.dir/ale/ALE.cpp.o] Error 127 i686-apple-darwin10-g++-4.2.1: no input files /bin/sh: -D_REENTRANT: command not found make[2]: *** [dolfin/CMakeFiles/dolfin.dir/common/real.cpp.o] Error 127 i686-apple-darwin10-g++-4.2.1: no input files /bin/sh: -D_REENTRANT: command not found make[2]: *** [dolfin/CMakeFiles/dolfin.dir/ale/TransfiniteInterpolation.cpp.o] Error 127 make[1]: *** [dolfin/CMakeFiles/dolfin.dir/all] Error 2 make: *** [all] Error 2 Failure with exit status: 2 Exit message: There was a problem building dolfin. Hairsh _______________________________________________ Mailing list: https://launchpad.net/~dorsal Post to : [email protected] Unsubscribe : https://launchpad.net/~dorsal More help : https://help.launchpad.net/ListHelp
