On Wed, Sep 1, 2010 at 8:39 AM, Harish Narayanan <[email protected]> wrote: > On 9/1/10 12:02 PM, Harish Narayanan wrote: >> On 9/1/10 2:44 AM, Marie Rognes wrote: >>> On 31. aug. 2010 22:56, Anders Logg wrote: >>>> On Tue, Aug 31, 2010 at 04:28:32PM +0200, Marie Rognes wrote: >>>> >>>>> On 31. aug. 2010 16:22, Johannes Ring wrote: >>>>> >>>>>> On Tue, Aug 31, 2010 at 4:13 PM, Marie Rognes <[email protected]> wrote: >>>>>> >>>>>> >>>>>>> I having some issues with PETSc (surprise) as of today. >>>>>>> >>>>>>> Dorsal tells me that (full log attached): >>>>>>> >>>>>>> [\snip] >>>>>>> >>>>>>> -- The following optional packages were found: >>>>>>> -- (OK) MPI >>>>>>> -- (OK) PETSC >>>>>>> -- (OK) SLEPC >>>>>>> -- (OK) UMFPACK >>>>>>> >>>>>>> [\snap] >>>>>>> >>>>>>> But: >>>>>>> >>>>>>> >>>>>>> >>>>>>>>>> from dolfin import * >>>>>>>>>> has_la_backend("PETSc") >>>>>>>>>> >>>>>>>>>> >>>>>>> False >>>>>>> >>>>>>> >>>>>>>>>> A = PETScMatrix() >>>>>>>>>> >>>>>>>>>> >>>>>>> Traceback (most recent call last): >>>>>>> File "<stdin>", line 1, in <module> >>>>>>> NameError: name 'PETScMatrix' is not defined >>>>>>> >>>>>>> >>>>>>>>>> >>>>>>> Help? >>>>>>> >>>>>>> >>>>>> There is no -DHAS_PETSC in your log. Try to clean up/remove the >>>>>> dorsal_build_dir inside the DOLFIN source directory. >>>>>> >>>>> >>>>> Removed. Check. >>>>> >>>>> >>>>> >>>>>> Then rerun Dorsal >>>>>> and see if the PETSc test passes. >>>>>> >>>>>> >>>>> -- The following optional packages were found: >>>>> -- (OK) MPI >>>>> -- (OK) PETSC >>>>> -- (OK) SLEPC >>>>> -- (OK) UMFPACK >>>>> -- (OK) PARMETIS >>>>> -- (OK) GMP >>>>> -- (OK) CGAL >>>>> -- (OK) ZLIB >>>>> -- (OK) PYTHON >>>>> -- The following optional packages could not be found: >>>>> -- (**) TRILINOS >>>>> -- (**) MTL4 >>>>> -- (**) CHOLMOD >>>>> -- (**) SCOTCH >>>>> -- Configuring done >>>>> -- Generating done >>>>> -- Build files have been written to: >>>>> /home/meg/local/dorsal_downloads/dolfin >>>>> make: *** No rule to make target `install'. Stop. >>>>> Failure with exit status: 2 >>>>> Exit message: There was a problem building dolfin. >>>>> >>>> I had the same problem (I think). It turned out to be a problem with my >>>> PETSC_ARCH variable which was set to linux-gnu-c-opt instead of >>>> linux-gnu-cxx-opt. >>>> >>>> >>> >>> Doesn't solve the problem for me :( >>> >>> - My PETSC_ARCH is set to linux-gnu-cxx-opt (cf gentoo.platform) >>> - cmake reports: -- PETSC_ARCH is linux-gnu-cxx-opt >>> - Still get same problem. >>> >>>> I think this changed in Dorsal at some point recently. >>>> >>>> >>> >>> Everything updated as of 20 seconds ago ... >> >> I too am now seeing strange things such as this: >> >> >> . >> . >> . >> >> -- PETSC_DIR is /Users/harish/Work/FEniCS/dev/src/petsc-3.1-p4 >> -- PETSC_ARCH is darwin10.0.0-cxx-opt >> -- Found petscconf.h >> -- PETSc test failed >> -- PETSc could not be found. Be sure to set PETSC_DIR and PETSC_ARCH. >> (missing: PETSC_TEST_RUNS) >> >> . >> . >> . >> >> -- (OK) MPI >> -- (OK) MTL4 >> -- (OK) UMFPACK >> -- (OK) CHOLMOD >> -- (OK) SCOTCH >> -- (OK) PARMETIS >> -- (OK) GMP >> -- (OK) CGAL >> -- (OK) ZLIB >> -- (OK) PYTHON >> -- The following optional packages could not be found: >> -- (**) PETSC >> -- (**) SLEPC >> -- (**) TRILINOS > > Following which (and independently), CMake fails catastrophically: > > Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o > [ 1%] cd /foo/dolfin/dorsal_build_dir/dolfin && /opt/local/bin/c++ > -Ddolfin_EXPORTS -DPACKAGE_VERSION=\"0.9.8\" -DBOOST_UBLAS_NDEBUG > -DHAS_MTL4 -DMTL_HAS_BLAS -DHAS_UMFPACK -DHAS_CHOLMOD -DHAS_SCOTCH > -DHAS_PARMETIS -DHAS_CGAL -DHAS_GMP -DHAS_ZLIB -DHAS_CPPUNIT -DHAS_MPI > -DMPICH_IGNORE_CXX_SEEK -frounding-math;-D_REENTRANT -O2 -g -fPIC > -I/foo/dolfin -I/opt/local/include/libxml2 > -I/Users/harish/Work/FEniCS/dev/include -I/opt/local/include > -I/Users/harish/Work/FEniCS/dev/src/mtl4 -I/opt/local/include/ufsparse > -I/opt/local/include/cppunit -o > CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o -c > /foo/dolfin/dolfin/ale/HarmonicSmoothing.cpp > i686-apple-darwin10-g++-4.2.1: no input files > i686-apple-darwin10-g++-4.2.1: no input files > Building CXX object > dolfin/CMakeFiles/dolfin.dir/ale/TransfiniteInterpolation.cpp.o > cd /foo/dolfin/dorsal_build_dir/dolfin && /opt/local/bin/c++ > -Ddolfin_EXPORTS -DPACKAGE_VERSION=\"0.9.8\" -DBOOST_UBLAS_NDEBUG > -DHAS_MTL4 -DMTL_HAS_BLAS -DHAS_UMFPACK -DHAS_CHOLMOD -DHAS_SCOTCH > -DHAS_PARMETIS -DHAS_CGAL -DHAS_GMP -DHAS_ZLIB -DHAS_CPPUNIT -DHAS_MPI > -DMPICH_IGNORE_CXX_SEEK -frounding-math;-D_REENTRANT -O2 -g -fPIC > -I/foo/dolfin -I/opt/local/include/libxml2 > -I/Users/harish/Work/FEniCS/dev/include -I/opt/local/include > -I/Users/harish/Work/FEniCS/dev/src/mtl4 -I/opt/local/include/ufsparse > -I/opt/local/include/cppunit -o > CMakeFiles/dolfin.dir/ale/TransfiniteInterpolation.cpp.o -c > /foo/dolfin/dolfin/ale/TransfiniteInterpolation.cpp > Building CXX object dolfin/CMakeFiles/dolfin.dir/common/real.cpp.o > /bin/sh: -D_REENTRANT: command not found > /bin/sh: -D_REENTRANT: command not found
I made a fix for this yesterday. Maybe you just need to clean up the CMake cache (remove the dorsal_build_dir folder)? Johannes > cd /foo/dolfin/dorsal_build_dir/dolfin && /opt/local/bin/c++ > -Ddolfin_EXPORTS -DPACKAGE_VERSION=\"0.9.8\" -DBOOST_UBLAS_NDEBUG > -DHAS_MTL4 -DMTL_HAS_BLAS -DHAS_UMFPACK -DHAS_CHOLMOD -DHAS_SCOTCH > -DHAS_PARMETIS -DHAS_CGAL -DHAS_GMP -DHAS_ZLIB -DHAS_CPPUNIT -DHAS_MPI > -DMPICH_IGNORE_CXX_SEEK -frounding-math;-D_REENTRANT -O2 -g -fPIC > -I/foo/dolfin -I/opt/local/include/libxml2 > -I/Users/harish/Work/FEniCS/dev/include -I/opt/local/include > -I/Users/harish/Work/FEniCS/dev/src/mtl4 -I/opt/local/include/ufsparse > -I/opt/local/include/cppunit -o > CMakeFiles/dolfin.dir/common/real.cpp.o -c > /foo/dolfin/dolfin/common/real.cpp > make[2]: *** [dolfin/CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o] > Error 127 > make[2]: *** Waiting for unfinished jobs.... > make[2]: *** [dolfin/CMakeFiles/dolfin.dir/ale/ALE.cpp.o] Error 127 > i686-apple-darwin10-g++-4.2.1: no input files > /bin/sh: -D_REENTRANT: command not found > make[2]: *** [dolfin/CMakeFiles/dolfin.dir/common/real.cpp.o] Error 127 > i686-apple-darwin10-g++-4.2.1: no input files > /bin/sh: -D_REENTRANT: command not found > make[2]: *** > [dolfin/CMakeFiles/dolfin.dir/ale/TransfiniteInterpolation.cpp.o] Error 127 > make[1]: *** [dolfin/CMakeFiles/dolfin.dir/all] Error 2 > make: *** [all] Error 2 > Failure with exit status: 2 > Exit message: There was a problem building dolfin. > > > Hairsh > > _______________________________________________ > Mailing list: https://launchpad.net/~dorsal > Post to : [email protected] > Unsubscribe : https://launchpad.net/~dorsal > More help : https://help.launchpad.net/ListHelp > _______________________________________________ Mailing list: https://launchpad.net/~dorsal Post to : [email protected] Unsubscribe : https://launchpad.net/~dorsal More help : https://help.launchpad.net/ListHelp
