On Mon, Nov 28, 2011 at 3:33 PM, Kristian Ølgaard <[email protected]> wrote: > I let Dorsal download/configure and build the entire FEniCS dev suite > with all the bells and whistles using the default options. > I only modified the download and install paths. > > When I run the navier-stokes demo in parallel (only tested the C++ > version), I get the following error after which the process hangs > (usually around time step 16, but that can vary!): > > mpirun -np 3 ./demo_navier-stokes > Process 0: Partitioned mesh, edge cut is 62. > Process 0: Computing tentative velocity > Process 0: Computing pressure correction > Process 0: Computing velocity correction > Process 0: t = 0.02 > Process 0: Computing tentative velocity > Process 0: Computing pressure correction > Process 0: Computing velocity correction > Process 0: t = 0.03 > Process 0: Computing tentative velocity > Process 0: Computing pressure correction > Process 0: Computing velocity correction > Process 0: t = 0.04 > Process 0: Computing tentative velocity > Process 0: Computing pressure correction > Process 0: Computing velocity correction > Process 0: t = 0.05 > Process 0: Computing tentative velocity > Process 0: Computing pressure correction > Process 0: Computing velocity correction > Process 0: t = 0.06 > Process 0: Computing tentative velocity > Process 0: Computing pressure correction > Process 0: Computing velocity correction > Process 0: t = 0.07 > Process 0: Computing tentative velocity > Process 0: Computing pressure correction > Process 0: Computing velocity correction > Process 0: t = 0.08 > Process 0: Computing tentative velocity > Process 0: Computing pressure correction > Process 0: Computing velocity correction > Process 0: t = 0.09 > Process 0: Computing tentative velocity > Process 0: Computing pressure correction > Process 0: Computing velocity correction > Process 0: t = 0.1 > Process 0: Computing tentative velocity > Process 0: Computing pressure correction > Process 0: Computing velocity correction > Process 0: t = 0.11 > Process 0: Computing tentative velocity > Process 0: Computing pressure correction > Process 0: Computing velocity correction > Process 0: t = 0.12 > Process 0: Computing tentative velocity > Process 0: Computing pressure correction > Process 0: Computing velocity correction > Process 0: t = 0.13 > Process 0: Computing tentative velocity > Process 0: Computing pressure correction > Process 0: Computing velocity correction > Process 0: t = 0.14 > Process 0: Computing tentative velocity > Process 0: Computing pressure correction > Process 0: Computing velocity correction > Process 0: t = 0.15 > Process 0: Computing tentative velocity > Process 0: Computing pressure correction > Process 0: Computing velocity correction > Process 0: t = 0.16 > Process 0: Computing tentative velocity > Process 0: Computing pressure correction > [2]PETSC ERROR: --------------------- Error Message > ------------------------------------ > [2]PETSC ERROR: Error in external library! > [2]PETSC ERROR: Error in HYPRE_IJMatrixCreate()! > [2]PETSC ERROR: > ------------------------------------------------------------------------ > [2]PETSC ERROR: Petsc Release Version 3.2.0, Patch 5, Sat Oct 29 > 13:45:54 CDT 2011 > [2]PETSC ERROR: See docs/changes/index.html for recent updates. > [2]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > [2]PETSC ERROR: See docs/index.html for manual pages. > [2]PETSC ERROR: > ------------------------------------------------------------------------ > [2]PETSC ERROR: Unknown Name on a linux-gnu named oelgaard-desktop by > oelgaard Mon Nov 28 15:27:24 2011 > [2]PETSC ERROR: Libraries linked from /home/oelgaard/software/fenics/lib > [2]PETSC ERROR: Configure run at Mon Nov 28 10:19:20 2011 > [2]PETSC ERROR: Configure options COPTFLAGS=-O2 --with-debugging=0 > --with-shared-libraries=1 --with-clanguage=cxx --with-parmetis=1 > --with-parmetis-dir=/usr --download-umfpack=1 --download-hypre=1 > --download-mumps=1 --download-scalapack=1 --download-blacs=1 > --download-ptscotch=1 --download-scotch=1 --with-ml=1 > --with-ml-lib=/home/oelgaard/software/fenics/lib/libml.so > --with-ml-include=/home/oelgaard/software/fenics/include/trilinos > --prefix=/home/oelgaard/software/fenics > [2]PETSC ERROR: > ------------------------------------------------------------------------ > [2]PETSC ERROR: MatHYPRE_IJMatrixCreate() line 71 in > /home/oelgaard/software/fenics/src/petsc-3.2-p5/src/dm/impls/da/hypre/mhyp.c > [2]PETSC ERROR: PCSetUp_HYPRE() line 100 in > /home/oelgaard/software/fenics/src/petsc-3.2-p5/src/ksp/pc/impls/hypre/hypre.c > [2]PETSC ERROR: PCSetUp() line 819 in > /home/oelgaard/software/fenics/src/petsc-3.2-p5/src/ksp/pc/interface/precon.c > [2]PETSC ERROR: KSPSetUp() line 260 in > /home/oelgaard/software/fenics/src/petsc-3.2-p5/src/ksp/ksp/interface/itfunc.c > [2]PETSC ERROR: KSPSolve() line 379 in > /home/oelgaard/software/fenics/src/petsc-3.2-p5/src/ksp/ksp/interface/itfunc.c > [2]PETSC ERROR: --------------------- Error Message > ------------------------------------ > [2]PETSC ERROR: Error in external library! > [2]PETSC ERROR: Error in HYPRE_DistroyXXX()! > [2]PETSC ERROR: > ------------------------------------------------------------------------ > [2]PETSC ERROR: Petsc Release Version 3.2.0, Patch 5, Sat Oct 29 > 13:45:54 CDT 2011 > [2]PETSC ERROR: See docs/changes/index.html for recent updates. > [2]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > [2]PETSC ERROR: See docs/index.html for manual pages. > [2]PETSC ERROR: > ------------------------------------------------------------------------ > [2]PETSC ERROR: Unknown Name on a linux-gnu named oelgaard-desktop by > oelgaard Mon Nov 28 15:27:24 2011 > [2]PETSC ERROR: Libraries linked from /home/oelgaard/software/fenics/lib > [2]PETSC ERROR: Configure run at Mon Nov 28 10:19:20 2011 > [2]PETSC ERROR: Configure options COPTFLAGS=-O2 --with-debugging=0 > --with-shared-libraries=1 --with-clanguage=cxx --with-parmetis=1 > --with-parmetis-dir=/usr --download-umfpack=1 --download-hypre=1 > --download-mumps=1 --download-scalapack=1 --download-blacs=1 > --download-ptscotch=1 --download-scotch=1 --with-ml=1 > --with-ml-lib=/home/oelgaard/software/fenics/lib/libml.so > --with-ml-include=/home/oelgaard/software/fenics/include/trilinos > --prefix=/home/oelgaard/software/fenics > [2]PETSC ERROR: > ------------------------------------------------------------------------ > [2]PETSC ERROR: PCDestroy_HYPRE() line 181 in > /home/oelgaard/software/fenics/src/petsc-3.2-p5/src/ksp/pc/impls/hypre/hypre.c > [2]PETSC ERROR: PCDestroy() line 119 in > /home/oelgaard/software/fenics/src/petsc-3.2-p5/src/ksp/pc/interface/precon.c > [2]PETSC ERROR: KSPDestroy() line 755 in > /home/oelgaard/software/fenics/src/petsc-3.2-p5/src/ksp/ksp/interface/itfunc.c > > Did anyone experience something similar?
Are you running Ubuntu 11.10? If so, I guess this is the bug that Garth claims to be in the OpenMPI package. I have turned off parallel testing of DOLFIN on the oneiric-i386 buildbot because of this. Johannes _______________________________________________ Mailing list: https://launchpad.net/~dorsal Post to : [email protected] Unsubscribe : https://launchpad.net/~dorsal More help : https://help.launchpad.net/ListHelp
