On 28 November 2011 15:45, Johannes Ring <[email protected]> wrote: > On Mon, Nov 28, 2011 at 3:33 PM, Kristian Ølgaard > <[email protected]> wrote: >> I let Dorsal download/configure and build the entire FEniCS dev suite >> with all the bells and whistles using the default options. >> I only modified the download and install paths. >> >> When I run the navier-stokes demo in parallel (only tested the C++ >> version), I get the following error after which the process hangs >> (usually around time step 16, but that can vary!): >> >> mpirun -np 3 ./demo_navier-stokes >> Process 0: Partitioned mesh, edge cut is 62. >> Process 0: Computing tentative velocity >> Process 0: Computing pressure correction >> Process 0: Computing velocity correction >> Process 0: t = 0.02 >> Process 0: Computing tentative velocity >> Process 0: Computing pressure correction >> Process 0: Computing velocity correction >> Process 0: t = 0.03 >> Process 0: Computing tentative velocity >> Process 0: Computing pressure correction >> Process 0: Computing velocity correction >> Process 0: t = 0.04 >> Process 0: Computing tentative velocity >> Process 0: Computing pressure correction >> Process 0: Computing velocity correction >> Process 0: t = 0.05 >> Process 0: Computing tentative velocity >> Process 0: Computing pressure correction >> Process 0: Computing velocity correction >> Process 0: t = 0.06 >> Process 0: Computing tentative velocity >> Process 0: Computing pressure correction >> Process 0: Computing velocity correction >> Process 0: t = 0.07 >> Process 0: Computing tentative velocity >> Process 0: Computing pressure correction >> Process 0: Computing velocity correction >> Process 0: t = 0.08 >> Process 0: Computing tentative velocity >> Process 0: Computing pressure correction >> Process 0: Computing velocity correction >> Process 0: t = 0.09 >> Process 0: Computing tentative velocity >> Process 0: Computing pressure correction >> Process 0: Computing velocity correction >> Process 0: t = 0.1 >> Process 0: Computing tentative velocity >> Process 0: Computing pressure correction >> Process 0: Computing velocity correction >> Process 0: t = 0.11 >> Process 0: Computing tentative velocity >> Process 0: Computing pressure correction >> Process 0: Computing velocity correction >> Process 0: t = 0.12 >> Process 0: Computing tentative velocity >> Process 0: Computing pressure correction >> Process 0: Computing velocity correction >> Process 0: t = 0.13 >> Process 0: Computing tentative velocity >> Process 0: Computing pressure correction >> Process 0: Computing velocity correction >> Process 0: t = 0.14 >> Process 0: Computing tentative velocity >> Process 0: Computing pressure correction >> Process 0: Computing velocity correction >> Process 0: t = 0.15 >> Process 0: Computing tentative velocity >> Process 0: Computing pressure correction >> Process 0: Computing velocity correction >> Process 0: t = 0.16 >> Process 0: Computing tentative velocity >> Process 0: Computing pressure correction >> [2]PETSC ERROR: --------------------- Error Message >> ------------------------------------ >> [2]PETSC ERROR: Error in external library! >> [2]PETSC ERROR: Error in HYPRE_IJMatrixCreate()! >> [2]PETSC ERROR: >> ------------------------------------------------------------------------ >> [2]PETSC ERROR: Petsc Release Version 3.2.0, Patch 5, Sat Oct 29 >> 13:45:54 CDT 2011 >> [2]PETSC ERROR: See docs/changes/index.html for recent updates. >> [2]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >> [2]PETSC ERROR: See docs/index.html for manual pages. >> [2]PETSC ERROR: >> ------------------------------------------------------------------------ >> [2]PETSC ERROR: Unknown Name on a linux-gnu named oelgaard-desktop by >> oelgaard Mon Nov 28 15:27:24 2011 >> [2]PETSC ERROR: Libraries linked from /home/oelgaard/software/fenics/lib >> [2]PETSC ERROR: Configure run at Mon Nov 28 10:19:20 2011 >> [2]PETSC ERROR: Configure options COPTFLAGS=-O2 --with-debugging=0 >> --with-shared-libraries=1 --with-clanguage=cxx --with-parmetis=1 >> --with-parmetis-dir=/usr --download-umfpack=1 --download-hypre=1 >> --download-mumps=1 --download-scalapack=1 --download-blacs=1 >> --download-ptscotch=1 --download-scotch=1 --with-ml=1 >> --with-ml-lib=/home/oelgaard/software/fenics/lib/libml.so >> --with-ml-include=/home/oelgaard/software/fenics/include/trilinos >> --prefix=/home/oelgaard/software/fenics >> [2]PETSC ERROR: >> ------------------------------------------------------------------------ >> [2]PETSC ERROR: MatHYPRE_IJMatrixCreate() line 71 in >> /home/oelgaard/software/fenics/src/petsc-3.2-p5/src/dm/impls/da/hypre/mhyp.c >> [2]PETSC ERROR: PCSetUp_HYPRE() line 100 in >> /home/oelgaard/software/fenics/src/petsc-3.2-p5/src/ksp/pc/impls/hypre/hypre.c >> [2]PETSC ERROR: PCSetUp() line 819 in >> /home/oelgaard/software/fenics/src/petsc-3.2-p5/src/ksp/pc/interface/precon.c >> [2]PETSC ERROR: KSPSetUp() line 260 in >> /home/oelgaard/software/fenics/src/petsc-3.2-p5/src/ksp/ksp/interface/itfunc.c >> [2]PETSC ERROR: KSPSolve() line 379 in >> /home/oelgaard/software/fenics/src/petsc-3.2-p5/src/ksp/ksp/interface/itfunc.c >> [2]PETSC ERROR: --------------------- Error Message >> ------------------------------------ >> [2]PETSC ERROR: Error in external library! >> [2]PETSC ERROR: Error in HYPRE_DistroyXXX()! >> [2]PETSC ERROR: >> ------------------------------------------------------------------------ >> [2]PETSC ERROR: Petsc Release Version 3.2.0, Patch 5, Sat Oct 29 >> 13:45:54 CDT 2011 >> [2]PETSC ERROR: See docs/changes/index.html for recent updates. >> [2]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >> [2]PETSC ERROR: See docs/index.html for manual pages. >> [2]PETSC ERROR: >> ------------------------------------------------------------------------ >> [2]PETSC ERROR: Unknown Name on a linux-gnu named oelgaard-desktop by >> oelgaard Mon Nov 28 15:27:24 2011 >> [2]PETSC ERROR: Libraries linked from /home/oelgaard/software/fenics/lib >> [2]PETSC ERROR: Configure run at Mon Nov 28 10:19:20 2011 >> [2]PETSC ERROR: Configure options COPTFLAGS=-O2 --with-debugging=0 >> --with-shared-libraries=1 --with-clanguage=cxx --with-parmetis=1 >> --with-parmetis-dir=/usr --download-umfpack=1 --download-hypre=1 >> --download-mumps=1 --download-scalapack=1 --download-blacs=1 >> --download-ptscotch=1 --download-scotch=1 --with-ml=1 >> --with-ml-lib=/home/oelgaard/software/fenics/lib/libml.so >> --with-ml-include=/home/oelgaard/software/fenics/include/trilinos >> --prefix=/home/oelgaard/software/fenics >> [2]PETSC ERROR: >> ------------------------------------------------------------------------ >> [2]PETSC ERROR: PCDestroy_HYPRE() line 181 in >> /home/oelgaard/software/fenics/src/petsc-3.2-p5/src/ksp/pc/impls/hypre/hypre.c >> [2]PETSC ERROR: PCDestroy() line 119 in >> /home/oelgaard/software/fenics/src/petsc-3.2-p5/src/ksp/pc/interface/precon.c >> [2]PETSC ERROR: KSPDestroy() line 755 in >> /home/oelgaard/software/fenics/src/petsc-3.2-p5/src/ksp/ksp/interface/itfunc.c >> >> Did anyone experience something similar? > > Are you running Ubuntu 11.10? If so, I guess this is the bug that > Garth claims to be in the OpenMPI package. I have turned off parallel > testing of DOLFIN on the oneiric-i386 buildbot because of this.
Yes I am. OK, so I'll just ignore this then, thanks. Kristian > Johannes > _______________________________________________ Mailing list: https://launchpad.net/~dorsal Post to : [email protected] Unsubscribe : https://launchpad.net/~dorsal More help : https://help.launchpad.net/ListHelp
