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http://mojo.codehaus.org/native2ascii-maven-plugin/index.html
Here's a similar suggestion from a blog post (in French):
https://blog.crafting-labs.fr/?post/2010/09/17/fichiers-.properties-java-en-UTF-8-avec-maven
I have not had a chance to test this out. But, I wonder if it would be possible to run the "build.properties" file through native2ascii (e.g. creating a file "./target/build-converted.properties") and then using that newly generated file to do the actual filtering & fill out the final dspace.cfg file. I'm not sure if this will work, but it may be worth trying, especially since Maven developers have closed the ticket related to this problem (https://jira.codehaus.org/browse/MRESOURCES-175)