created this as JIRA for this as well
https://jira.duraspace.org/browse/DS-3082
if somebody has a suggestion how to remedy this - please let me know
when running fresh install in dspace 5 with oracle I get errors
I looked into the details of creating bitstreamformatregistry entries:
DatabaseRegistryUpdater afterMigrate
calls DatabaseManager.create
calls DatabaseManager.getColumnNames(table), where table =
'bitstreamformatregistry'
getColumnNames unfortunately returns an empty list
although I can see in the DB that the table has columns
----
here are the log messages
2016-02-25 15:06:31,834 ERROR org.dspace.storage.rdbms.DatabaseRegistryUpdater
@ Error attempting to update Bitstream Format and/or Metadata Registries
java.lang.NullPointerException
at org.dspace.storage.rdbms.ColumnInfo.canonicalize(ColumnInfo.java:154)
at
org.dspace.storage.rdbms.TableRow.canonicalizeAndCheck(TableRow.java:661)
at org.dspace.storage.rdbms.TableRow.setColumn(TableRow.java:499)
at
org.dspace.storage.rdbms.DatabaseManager.doInsertGeneric(DatabaseManager.java:1827)
at
org.dspace.storage.rdbms.DatabaseManager.insert(DatabaseManager.java:715)
at
org.dspace.storage.rdbms.DatabaseManager.create(DatabaseManager.java:476)
at org.dspace.content.BitstreamFormat.create(BitstreamFormat.java:403)
at
org.dspace.administer.RegistryLoader.loadFormat(RegistryLoader.java:182)
at
org.dspace.administer.RegistryLoader.loadBitstreamFormats(RegistryLoader.java:136)
at
org.dspace.storage.rdbms.DatabaseRegistryUpdater.updateRegistries(DatabaseRegistryUpdater.java:63)
at
org.dspace.storage.rdbms.DatabaseRegistryUpdater.afterMigrate(DatabaseRegistryUpdater.java:129)
at
org.flywaydb.core.internal.command.DbMigrate$3.doInTransaction(DbMigrate.java:226)
at
org.flywaydb.core.internal.util.jdbc.TransactionTemplate.execute(TransactionTemplate.java:72)
at
org.flywaydb.core.internal.command.DbMigrate.migrate(DbMigrate.java:223)
at org.flywaydb.core.Flyway$1.execute(Flyway.java:864)
at org.flywaydb.core.Flyway$1.execute(Flyway.java:811)
at org.flywaydb.core.Flyway.execute(Flyway.java:1171)
at org.flywaydb.core.Flyway.migrate(Flyway.java:811)
at
org.dspace.storage.rdbms.DatabaseUtils.updateDatabase(DatabaseUtils.java:419)
at
org.dspace.storage.rdbms.DatabaseUtils.updateDatabase(DatabaseUtils.java:338)
at
org.dspace.storage.rdbms.DatabaseManager.initialize(DatabaseManager.java:1373)
at
org.dspace.storage.rdbms.DatabaseManager.getDbName(DatabaseManager.java:1491)
at org.dspace.storage.rdbms.DatabaseUtils.main(DatabaseUtils.java:191)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at
org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:226)
at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:78)
2016-02-25 15:06:32,064 ERROR org.dspace.storage.rdbms.DatabaseRegistryUpdater
@ Error attempting to add/update default DSpace Groups
java.lang.NullPointerException
at java.util.regex.Matcher.getTextLength(Matcher.java:1234)
at java.util.regex.Matcher.reset(Matcher.java:308)
at java.util.regex.Matcher.<init>(Matcher.java:228)
at java.util.regex.Pattern.matcher(Pattern.java:1088)
at
org.dspace.storage.rdbms.DatabaseManager.findByUnique(DatabaseManager.java:541)
at
org.dspace.storage.rdbms.DatabaseManager.find(DatabaseManager.java:505)
at org.dspace.eperson.Group.find(Group.java:683)
at org.dspace.eperson.Group.initDefaultGroupNames(Group.java:1500)
at
org.dspace.storage.rdbms.DatabaseRegistryUpdater.afterMigrate(DatabaseRegistryUpdater.java:141)
at
org.flywaydb.core.internal.command.DbMigrate$3.doInTransaction(DbMigrate.java:226)
at
org.flywaydb.core.internal.util.jdbc.TransactionTemplate.execute(TransactionTemplate.java:72)
at
org.flywaydb.core.internal.command.DbMigrate.migrate(DbMigrate.java:223)
at org.flywaydb.core.Flyway$1.execute(Flyway.java:864)
at org.flywaydb.core.Flyway$1.execute(Flyway.java:811)
at org.flywaydb.core.Flyway.execute(Flyway.java:1171)
at org.flywaydb.core.Flyway.migrate(Flyway.java:811)
at
org.dspace.storage.rdbms.DatabaseUtils.updateDatabase(DatabaseUtils.java:419)
at
org.dspace.storage.rdbms.DatabaseUtils.updateDatabase(DatabaseUtils.java:338)
at
org.dspace.storage.rdbms.DatabaseManager.initialize(DatabaseManager.java:1373)
at
org.dspace.storage.rdbms.DatabaseManager.getDbName(DatabaseManager.java:1491)
at org.dspace.storage.rdbms.DatabaseUtils.main(DatabaseUtils.java:191)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at
org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:226)
at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:78)
________________
Monika Mevenkamp
[email protected]
http://mo-meven.tumblr.com/
http://mcmprogramming.com/mo.meven/
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