Hi Monika, Did you change the database schema for your DSpace installation? Or did you change anything else database related (in comparison with the defaults)?
Best regards, Tom [image: logo] *Tom Desair* *250 Lucius Gordon Drive, Suite B-3A, West Henrietta, NY 14586* *Esperantolaan 4, Heverlee 3001, Belgium* www.atmire.com <http://atmire.com/website/?q=services&utm_source=emailfooter&utm_medium=email&utm_campaign=tomd> 2016-02-25 21:20 GMT+01:00 Monika Mevenkamp <[email protected]>: > created this as JIRA for this as well > > https://jira.duraspace.org/browse/DS-3082 > > if somebody has a suggestion how to remedy this - please let me know > > > > when running fresh install in dspace 5 with oracle I get errors > > I looked into the details of creating bitstreamformatregistry entries: > > > DatabaseRegistryUpdater afterMigrate > calls DatabaseManager.create > calls DatabaseManager.getColumnNames(table), where table = > 'bitstreamformatregistry' > > getColumnNames unfortunately returns an empty list > > although I can see in the DB that the table has columns > > > ---- > here are the log messages > > 2016-02-25 15:06:31,834 ERROR > org.dspace.storage.rdbms.DatabaseRegistryUpdater @ Error attempting to update > Bitstream Format and/or Metadata Registries > java.lang.NullPointerException > at > org.dspace.storage.rdbms.ColumnInfo.canonicalize(ColumnInfo.java:154) > at > org.dspace.storage.rdbms.TableRow.canonicalizeAndCheck(TableRow.java:661) > at org.dspace.storage.rdbms.TableRow.setColumn(TableRow.java:499) > at > org.dspace.storage.rdbms.DatabaseManager.doInsertGeneric(DatabaseManager.java:1827) > at > org.dspace.storage.rdbms.DatabaseManager.insert(DatabaseManager.java:715) > at > org.dspace.storage.rdbms.DatabaseManager.create(DatabaseManager.java:476) > at org.dspace.content.BitstreamFormat.create(BitstreamFormat.java:403) > at > org.dspace.administer.RegistryLoader.loadFormat(RegistryLoader.java:182) > at > org.dspace.administer.RegistryLoader.loadBitstreamFormats(RegistryLoader.java:136) > at > org.dspace.storage.rdbms.DatabaseRegistryUpdater.updateRegistries(DatabaseRegistryUpdater.java:63) > at > org.dspace.storage.rdbms.DatabaseRegistryUpdater.afterMigrate(DatabaseRegistryUpdater.java:129) > at > org.flywaydb.core.internal.command.DbMigrate$3.doInTransaction(DbMigrate.java:226) > at > org.flywaydb.core.internal.util.jdbc.TransactionTemplate.execute(TransactionTemplate.java:72) > at > org.flywaydb.core.internal.command.DbMigrate.migrate(DbMigrate.java:223) > at org.flywaydb.core.Flyway$1.execute(Flyway.java:864) > at org.flywaydb.core.Flyway$1.execute(Flyway.java:811) > at org.flywaydb.core.Flyway.execute(Flyway.java:1171) > at org.flywaydb.core.Flyway.migrate(Flyway.java:811) > at > org.dspace.storage.rdbms.DatabaseUtils.updateDatabase(DatabaseUtils.java:419) > at > org.dspace.storage.rdbms.DatabaseUtils.updateDatabase(DatabaseUtils.java:338) > at > org.dspace.storage.rdbms.DatabaseManager.initialize(DatabaseManager.java:1373) > at > org.dspace.storage.rdbms.DatabaseManager.getDbName(DatabaseManager.java:1491) > at org.dspace.storage.rdbms.DatabaseUtils.main(DatabaseUtils.java:191) > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) > at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > at java.lang.reflect.Method.invoke(Method.java:606) > at > org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:226) > at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:78) > 2016-02-25 15:06:32,064 ERROR > org.dspace.storage.rdbms.DatabaseRegistryUpdater @ Error attempting to > add/update default DSpace Groups > java.lang.NullPointerException > at java.util.regex.Matcher.getTextLength(Matcher.java:1234) > at java.util.regex.Matcher.reset(Matcher.java:308) > at java.util.regex.Matcher.<init>(Matcher.java:228) > at java.util.regex.Pattern.matcher(Pattern.java:1088) > at > org.dspace.storage.rdbms.DatabaseManager.findByUnique(DatabaseManager.java:541) > at > org.dspace.storage.rdbms.DatabaseManager.find(DatabaseManager.java:505) > at org.dspace.eperson.Group.find(Group.java:683) > at org.dspace.eperson.Group.initDefaultGroupNames(Group.java:1500) > at > org.dspace.storage.rdbms.DatabaseRegistryUpdater.afterMigrate(DatabaseRegistryUpdater.java:141) > at > org.flywaydb.core.internal.command.DbMigrate$3.doInTransaction(DbMigrate.java:226) > at > org.flywaydb.core.internal.util.jdbc.TransactionTemplate.execute(TransactionTemplate.java:72) > at > org.flywaydb.core.internal.command.DbMigrate.migrate(DbMigrate.java:223) > at org.flywaydb.core.Flyway$1.execute(Flyway.java:864) > at org.flywaydb.core.Flyway$1.execute(Flyway.java:811) > at org.flywaydb.core.Flyway.execute(Flyway.java:1171) > at org.flywaydb.core.Flyway.migrate(Flyway.java:811) > at > org.dspace.storage.rdbms.DatabaseUtils.updateDatabase(DatabaseUtils.java:419) > at > org.dspace.storage.rdbms.DatabaseUtils.updateDatabase(DatabaseUtils.java:338) > at > org.dspace.storage.rdbms.DatabaseManager.initialize(DatabaseManager.java:1373) > at > org.dspace.storage.rdbms.DatabaseManager.getDbName(DatabaseManager.java:1491) > at org.dspace.storage.rdbms.DatabaseUtils.main(DatabaseUtils.java:191) > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) > at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > at java.lang.reflect.Method.invoke(Method.java:606) > at > org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:226) > at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:78) > > > > > > ________________ > Monika Mevenkamp > [email protected] > > http://mo-meven.tumblr.com/ > http://mcmprogramming.com/mo.meven/ > > > > -- > You received this message because you are subscribed to the Google Groups > "DSpace Technical Support" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/dspace-tech. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "DSpace Technical Support" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/dspace-tech. For more options, visit https://groups.google.com/d/optout.
