I decided to follow with the installation on the virtual linux machine
because in this case I don’t get any complaints about additional
software and I don’t need to comment any line in the installation
script. I also commented the line in add_subdirectory(stokesdarcy)
from the test/multidomain/boundary/CMakeLists.txt and I delete the
folder build-cmake from the dumux directory and I still get the errors
below on this laptop. I ran also the ./test_dumux. Sh and I got the
following: Compiling a one-phase test using a cell-centered TPFA
discretization (might take a while)...
make: *** No rule to make target 'test_1pcctpfa'. Stop.
Running simulation...
./test_dumux.sh: line 8: ./test_1pcctpfa: No such file or directory
OpenGL Warning: No pincher, please call crStateSetCurrentPointers() in
your SPU
OpenGL Warning: vboxCall failed with VBox status code VERR_BUFFER_OVERFLOW
OpenGL Warning: No pincher, please call crStateSetCurrentPointers() in
your SPU
The errros at executing the installation script are shown below:
CMake Error at
/home/maria/projects/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
(add_executable):
add_executable cannot create target "test_stokes1pdarcy2pvertical"
because
another target with the same name already exists. The existing
target is
an executable created in source directory
"/home/maria/projects/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p_2p".
See documentation for policy CMP0002 for more details.
Call Stack (most recent call first):
test/multidomain/boundary/stokesdarcy/1p_2p/CMakeLists.txt:5
(dune_add_test)
CMake Error at
/home/maria/projects/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
(add_executable):
add_executable cannot create target "test_stokes1p2cdarcy1p2chorizontal"
because another target with the same name already exists. The existing
target is an executable created in source directory
"/home/maria/projects/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow".
See documentation for policy CMP0002 for more details.
Call Stack (most recent call first):
test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow/CMakeLists.txt:5
(dune_add_test)
CMake Error at
/home/maria/projects/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
(add_executable):
add_executable cannot create target "test_stokes1p2cdarcy2p2chorizontal"
because another target with the same name already exists. The existing
target is an executable created in source directory
"/home/maria/projects/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_2p2c".
See documentation for policy CMP0002 for more details.
Call Stack (most recent call first):
test/multidomain/boundary/stokesdarcy/1p2c_2p2c/CMakeLists.txt:5
(dune_add_test)
CMake Error at
/home/maria/projects/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
(add_executable):
add_executable cannot create target "test_stokes1pdarcy2pvertical"
because
another target with the same name already exists. The existing
target is
an executable created in source directory
"/home/maria/projects/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p_2p".
See documentation for policy CMP0002 for more details.
Call Stack (most recent call first):
test/multidomain/boundary/stokesdarcy/1p_2p/CMakeLists.txt:5
(dune_add_test)
CMake Error at
/home/maria/projects/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
(add_executable):
add_executable cannot create target "test_stokes1p2cdarcy1p2chorizontal"
because another target with the same name already exists. The existing
target is an executable created in source directory
"/home/maria/projects/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow".
See documentation for policy CMP0002 for more details.
Call Stack (most recent call first):
test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow/CMakeLists.txt:5
(dune_add_test)
CMake Error at
/home/maria/projects/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
(add_executable):
add_executable cannot create target "test_stokes1p2cdarcy2p2chorizontal"
because another target with the same name already exists. The existing
target is an executable created in source directory
"/home/maria/projects/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_2p2c".
See documentation for policy CMP0002 for more details.
Call Stack (most recent call first):
test/multidomain/boundary/stokesdarcy/1p2c_2p2c/CMakeLists.txt:5
(dune_add_test)
*From:*Timo Koch <[email protected]>
*Sent:* 16. juli 2018 13:35
*To:* Maria Bonto <[email protected]>
*Cc:* [email protected]
*Subject:* Re: [DuMuX] Error while installing dumux
Hi Maria,
you can choose your compiler in the file “cmake.opts” that was
downloaded to the newly created folder.
Replace the lines /usr/bin/g++ and /usr/bin/gcc by a path to a newer
compiler, maybe /usr/bin/gcc is still pointing to 4.2.1. By the way
gcc 4.9 is still ancient. There is gcc 8.1, you can install it with
homebrew.
After you replace the lines, delete the build directories by typing
“rm -rf d*/build-cmake” and run dune control again
“./dune-common/bin/dunecontrol —opts=cmake.opts all”. Maybe that helps.
Timo
On 16. Jul 2018, at 13:20, Maria Bonto <[email protected]
<mailto:[email protected]>> wrote:
I just eliminated paraview from that line. However, I had to
comment the paragraph below because it says that gcc version is
4.2.1 and it needs at least 4.9.0. I downloaded a new one and
added it to the path.
When I type gcc --version it says 4.9.4. However, in the
installation I still got the same error.
see below:
DuMuX mac$ gcc --version
gcc (Homebrew GCC 4.9.4_1) 4.9.4
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.
There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE.
Moreover, I tried the installation (with all the lines in the
script) on another laptop on a virtual linux environment. I don't
get any complaints about gcc, paraview etc, but I get exactly the
same error related to Cmake, as the error I get on my Mac.
------------------------------------------------------------------------
*De:*Timo Koch <[email protected] <mailto:[email protected]>>
*Enviado:*lunes, 16 de julio de 2018 13:14:39
*Para:*[email protected]
<mailto:[email protected]>; Maria Bonto
*Asunto:*Re: [DuMuX] Error while installing dumux
Hi Maria,
most likely it cannot find paraview because it's installed as an
app on macOS. Can you only delete paraview from the script in that
line and not comment the whole line. The other checks are
important. You probably need a newer compiler. Can you type the
output of gcc --version?
Timo
On 16.07.2018 13:09, Maria Bonto wrote:
This does not work.
I get the following errors below. When I first started
installing the software on the Mac I got an error about
paraview. It was saying that paraview was not installed when
it actually was installed. So I was told to comment that line
where the script checks paraview. I can see in the last line
that it complains again about paraview.
*/Volumes/MARY/DuMuX/dumux/dune-alugrid/dune/alugrid/common/memory.hh:184:14:error:
*
*thread-local storage is not supported for the current target*
static thread_local MemoryPoolType pool;
* ^*
In file included from
/Volumes/MARY/DuMuX/dumux/dumux/test/porousmediumflow/1p/implicit/test_1pfv.cc:35
<http://test_1pfv.cc:35/>:
In file included from
/Volumes/MARY/DuMuX/dumux/dumux/test/porousmediumflow/1p/implicit/1ptestproblem.hh:30:
In file included from
/Volumes/MARY/DuMuX/dumux/dumux/dumux/discretization/cellcentered/tpfa/properties.hh:30:
In file included from
/Volumes/MARY/DuMuX/dumux/dumux/dumux/common/boundaryflag.hh:36:
In file included from
/Volumes/MARY/DuMuX/dumux/dune-subgrid/dune/subgrid/subgrid.hh:28:
*/Volumes/MARY/DuMuX/dumux/dune-subgrid/dune/subgrid/subgrid/subgridleafintersectioniterator.hh:5:10:fatal
error: *
*'tr1/memory' file not found*
#include <tr1/memory>
* ^*
2 errors generated.
make[3]: ***
[test/porousmediumflow/1p/implicit/CMakeFiles/test_1pcctpfa.dir/test_1pfv.cc.o]
Error 1
make[2]: ***
[test/porousmediumflow/1p/implicit/CMakeFiles/test_1pcctpfa.dir/all]
Error 2
make[1]: ***
[test/porousmediumflow/1p/implicit/CMakeFiles/test_1pcctpfa.dir/rule]
Error 2
make: ***
[test/porousmediumflow/1p/implicit/CMakeFiles/test_1pcctpfa.dir/rule]
Error 2
Running simulation...
./test_dumux.sh: line 8: ./test_1pcctpfa: No such file or
directory
./test_dumux.sh: line 9: paraview: command not found
------------------------------------------------------------------------
*De:*Bernd Flemisch<[email protected]>
<mailto:[email protected]>
*Enviado:*lunes, 16 de julio de 2018 12:59:25
*Para:*Maria Bonto; DuMuX User Forum
*Asunto:*Re: [DuMuX] Error while installing dumux
Ok. Try a
cd /Volumes/MARY/DuMuX/dumux
./test_dumux.sh
Bernd
On 07/16/2018 12:55 PM, Maria Bonto wrote:
I did that. I didn't get any errors in this case.
Configuring done
-- Generating done
-- Build files have been written to:
/Volumes/MARY/DuMuX/dumux/dumux/build-cmake
--- calling make for dumux ---
build directory: build-cmake
cmake --build . --
--- dumux done ---
--- done ---
------------------------------------------------------------------------
*De:*Bernd Flemisch<[email protected]>
<mailto:[email protected]>
*Enviado:*lunes, 16 de julio de 2018 12:49:26
*Para:*Maria Bonto; DuMuX User Forum
*Asunto:*Re: [DuMuX] Error while installing dumux
Can you remove the line, then do a
cd /Volumes/MARY/DuMuX/dumux/
rm -rf dumux/build-cmake
./dune-common/bin/dunecontrol --opts=cmake.opts
--only=dumux all
and see if that works?
Bernd
On 07/16/2018 12:33 PM, Maria Bonto wrote:
Dear Bernd,
I did what you suggested and I still get the same
errors. After running the script again I saw that the
folder is created again and also the line that I
removed. I tried the same procedure several times but
I still get the following errors:
CMake Error at
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
(add_executable):
add_executable cannot create target
"test_stokes1pdarcy2pvertical" because
another target with the same name already exists. The
existing target is
an executable created in source directory
"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p_2p".
See documentation for policy CMP0002 for more details.
Call Stack (most recent call first):
test/multidomain/boundary/stokesdarcy/1p_2p/CMakeLists.txt:5
(dune_add_test)
CMake Error at
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
(add_executable):
add_executable cannot create target
"test_stokes1p2cdarcy1p2chorizontal"
because another target with the same name already
exists. The existing
target is an executable created in source directory
"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow".
See documentation for policy CMP0002 for more details.
Call Stack (most recent call first):
test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow/CMakeLists.txt:5
(dune_add_test)
CMake Error at
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
(add_executable):
add_executable cannot create target
"test_stokes1p2cdarcy2p2chorizontal"
because another target with the same name already
exists. The existing
target is an executable created in source directory
"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_2p2c".
See documentation for policy CMP0002 for more details.
Call Stack (most recent call first):
test/multidomain/boundary/stokesdarcy/1p2c_2p2c/CMakeLists.txt:5
(dune_add_test)
Regards,
María.
------------------------------------------------------------------------
*De:*Bernd Flemisch<[email protected]>
<mailto:[email protected]>
*Enviado:*lunes, 16 de julio de 2018 11:56:19
*Para:*Maria Bonto; DuMuX User Forum
*Asunto:*Re: [DuMuX] Error while installing dumux
Ok, thank you. Apparently, the constructions that we
do in the CMakeLists.txt of
test/multidomain/boundary/stokesdarcy/1p_2p and
test/multidomain/boundary/stokesdarcy/1p2c_2p2c result
in problems on your Mac.
As a temporary workaround to get things running, it
should be ok to comment/remove the line
add_subdirectory(stokesdarcy)
from test/multidomain/boundary/CMakeLists.txt, remove
the folder build-cmake from your dumux directory and
run the script again.
Meanwhile, we will try to fix the problem in the
offending CMakeLists.txt.
Kind regards
Bernd
On 07/16/2018 11:45 AM, Maria Bonto wrote:
Dear Bernd,
I started again from the beginning but I still get
the same errors.
Regards,
María.
------------------------------------------------------------------------
*De:*Bernd Flemisch<[email protected]>
<mailto:[email protected]>
*Enviado:*lunes, 16 de julio de 2018 11:34:33
*Para:*Maria Bonto; DuMuX User Forum
*Asunto:*Re: [DuMuX] Error while installing dumux
Can you maybe try to restart from scratch?
Kind regards
Bernd
On 07/16/2018 11:25 AM, Maria Bonto wrote:
I installed gfortran 4.9.2, but I still get
errors. I attach the new console output.
------------------------------------------------------------------------
*De:*Bernd
Flemisch<[email protected]>
<mailto:[email protected]>
*Enviado:*lunes, 16 de julio de 2018 10:50:26
*Para:*Maria Bonto
*Asunto:*Re: [DuMuX] Error while installing dumux
Ok, you need a Fortran compiler. On Mac, you
might want to want to consider
https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4
Image removed by sender.
<https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4>
How should I install a Fortran compiler on a
Mac? (OS X 10 ...
<https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4>
scicomp.stackexchange.com
<http://scicomp.stackexchange.com/>
Related question: State of the Mac OS in
Scientific Computing and HPC A significant
number of software packages in computational
science are written in Fortran, and Fortran
isn't going away.
Kind regards
Bernd
On 07/16/2018 10:37 AM, Maria Bonto wrote:
Dear Bernd,
Attached please find a txt. file with the
console messages after running the
installation script.
Regards,
María.
------------------------------------------------------------------------
*De:*Bernd
Flemisch<[email protected]>
<mailto:[email protected]>
*Enviado:*lunes, 16 de julio de 2018 10:28:20
*Para:*DuMuX User Forum; Maria Bonto
*Asunto:*Re: [DuMuX] Error while
installing dumux
Hi Maria,
can you please also post the console
output that you get from the install
script or from running dunecontrol directly?
Kind regards
Bernd
On 07/16/2018 10:13 AM, Maria Bonto wrote:
Dear Sir/Madam,
I was trying to install dumux on a Mac
OS X 10.10 for the dumux course but I
get the following error: failed to
build the dune libraries.
I am attaching the error log file I get.
Thank you in advance.
Best regards,
María.
_______________________________________________
Dumux mailing list
[email protected]
<mailto:[email protected]>
https://listserv.uni-stuttgart.de/mailman/listinfo/dumux
--
_______________________________________________________________
Bernd Flemisch phone: +49
711 685 69162
IWS, Universität Stuttgart fax: +49
711 685 60430
Pfaffenwaldring 61
email:[email protected]
<mailto:[email protected]>
D-70569 Stuttgart
url:www.hydrosys.uni-stuttgart.de
<http://www.hydrosys.uni-stuttgart.de/>
_______________________________________________________________
--
_______________________________________________________________
Bernd Flemisch phone: +49 711
685 69162
IWS, Universität Stuttgart fax: +49 711
685 60430
Pfaffenwaldring 61
email:[email protected]
<mailto:[email protected]>
D-70569 Stuttgart
url:www.hydrosys.uni-stuttgart.de
<http://www.hydrosys.uni-stuttgart.de/>
_______________________________________________________________
--
_______________________________________________________________
Bernd Flemisch phone: +49 711 685
69162
IWS, Universität Stuttgart fax: +49 711 685
60430
Pfaffenwaldring 61
email:[email protected]
<mailto:[email protected]>
D-70569 Stuttgart
url:www.hydrosys.uni-stuttgart.de
<http://www.hydrosys.uni-stuttgart.de/>
_______________________________________________________________
--
_______________________________________________________________
Bernd Flemisch phone: +49 711 685 69162
IWS, Universität Stuttgart fax: +49 711 685 60430
Pfaffenwaldring 61 email:[email protected]
<mailto:[email protected]>
D-70569 Stuttgart url:www.hydrosys.uni-stuttgart.de
<http://www.hydrosys.uni-stuttgart.de/>
_______________________________________________________________
--
_______________________________________________________________
Bernd Flemisch phone: +49 711 685 69162
IWS, Universität Stuttgart fax: +49 711 685 60430
Pfaffenwaldring 61 email:[email protected]
<mailto:[email protected]>
D-70569 Stuttgart url:www.hydrosys.uni-stuttgart.de
<http://www.hydrosys.uni-stuttgart.de/>
_______________________________________________________________
--
_______________________________________________________________
Bernd Flemisch phone: +49 711 685 69162
IWS, Universität Stuttgart fax: +49 711 685 60430
Pfaffenwaldring 61 email:[email protected]
<mailto:[email protected]>
D-70569 Stuttgart url:www.hydrosys.uni-stuttgart.de
<http://www.hydrosys.uni-stuttgart.de/>
_______________________________________________________________
_______________________________________________
Dumux mailing list
[email protected]
<mailto:[email protected]>
https://listserv.uni-stuttgart.de/mailman/listinfo/dumux
_______________________________________________
Dumux mailing list
[email protected]
https://listserv.uni-stuttgart.de/mailman/listinfo/dumux
