This does not work.
I get the following errors below. When I first started installing the software
on the Mac I got an error about paraview. It was saying that paraview was not
installed when it actually was installed. So I was told to comment that line
where the script checks paraview. I can see in the last line that it complains
again about paraview.
/Volumes/MARY/DuMuX/dumux/dune-alugrid/dune/alugrid/common/memory.hh:184:14:
error:
thread-local storage is not supported for the current target
static thread_local MemoryPoolType pool;
^
In file included from
/Volumes/MARY/DuMuX/dumux/dumux/test/porousmediumflow/1p/implicit/test_1pfv.cc:35:
In file included from
/Volumes/MARY/DuMuX/dumux/dumux/test/porousmediumflow/1p/implicit/1ptestproblem.hh:30:
In file included from
/Volumes/MARY/DuMuX/dumux/dumux/dumux/discretization/cellcentered/tpfa/properties.hh:30:
In file included from
/Volumes/MARY/DuMuX/dumux/dumux/dumux/common/boundaryflag.hh:36:
In file included from
/Volumes/MARY/DuMuX/dumux/dune-subgrid/dune/subgrid/subgrid.hh:28:
/Volumes/MARY/DuMuX/dumux/dune-subgrid/dune/subgrid/subgrid/subgridleafintersectioniterator.hh:5:10:
fatal error:
'tr1/memory' file not found
#include <tr1/memory>
^
2 errors generated.
make[3]: ***
[test/porousmediumflow/1p/implicit/CMakeFiles/test_1pcctpfa.dir/test_1pfv.cc.o]
Error 1
make[2]: ***
[test/porousmediumflow/1p/implicit/CMakeFiles/test_1pcctpfa.dir/all] Error 2
make[1]: ***
[test/porousmediumflow/1p/implicit/CMakeFiles/test_1pcctpfa.dir/rule] Error 2
make: *** [test/porousmediumflow/1p/implicit/CMakeFiles/test_1pcctpfa.dir/rule]
Error 2
Running simulation...
./test_dumux.sh: line 8: ./test_1pcctpfa: No such file or directory
./test_dumux.sh: line 9: paraview: command not found
________________________________
De: Bernd Flemisch <[email protected]>
Enviado: lunes, 16 de julio de 2018 12:59:25
Para: Maria Bonto; DuMuX User Forum
Asunto: Re: [DuMuX] Error while installing dumux
Ok. Try a
cd /Volumes/MARY/DuMuX/dumux
./test_dumux.sh
Bernd
On 07/16/2018 12:55 PM, Maria Bonto wrote:
I did that. I didn't get any errors in this case.
Configuring done
-- Generating done
-- Build files have been written to: /Volumes/MARY/DuMuX/dumux/dumux/build-cmake
--- calling make for dumux ---
build directory: build-cmake
cmake --build . --
--- dumux done ---
--- done ---
________________________________
De: Bernd Flemisch
<[email protected]><mailto:[email protected]>
Enviado: lunes, 16 de julio de 2018 12:49:26
Para: Maria Bonto; DuMuX User Forum
Asunto: Re: [DuMuX] Error while installing dumux
Can you remove the line, then do a
cd /Volumes/MARY/DuMuX/dumux/
rm -rf dumux/build-cmake
./dune-common/bin/dunecontrol --opts=cmake.opts --only=dumux all
and see if that works?
Bernd
On 07/16/2018 12:33 PM, Maria Bonto wrote:
Dear Bernd,
I did what you suggested and I still get the same errors. After running the
script again I saw that the folder is created again and also the line that I
removed. I tried the same procedure several times but I still get the following
errors:
CMake Error at
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
(add_executable):
add_executable cannot create target "test_stokes1pdarcy2pvertical" because
another target with the same name already exists. The existing target is
an executable created in source directory
"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p_2p".
See documentation for policy CMP0002 for more details.
Call Stack (most recent call first):
test/multidomain/boundary/stokesdarcy/1p_2p/CMakeLists.txt:5 (dune_add_test)
CMake Error at
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
(add_executable):
add_executable cannot create target "test_stokes1p2cdarcy1p2chorizontal"
because another target with the same name already exists. The existing
target is an executable created in source directory
"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow".
See documentation for policy CMP0002 for more details.
Call Stack (most recent call first):
test/multidomain/boundary/stokesdarcy/1p2c_1p2c/horizontalflow/CMakeLists.txt:5
(dune_add_test)
CMake Error at
/Volumes/MARY/DuMuX/dumux/dune-common/cmake/modules/DuneTestMacros.cmake:255
(add_executable):
add_executable cannot create target "test_stokes1p2cdarcy2p2chorizontal"
because another target with the same name already exists. The existing
target is an executable created in source directory
"/Volumes/MARY/DuMuX/dumux/dumux/test/multidomain/boundary/stokesdarcy/1p2c_2p2c".
See documentation for policy CMP0002 for more details.
Call Stack (most recent call first):
test/multidomain/boundary/stokesdarcy/1p2c_2p2c/CMakeLists.txt:5
(dune_add_test)
Regards,
María.
________________________________
De: Bernd Flemisch
<[email protected]><mailto:[email protected]>
Enviado: lunes, 16 de julio de 2018 11:56:19
Para: Maria Bonto; DuMuX User Forum
Asunto: Re: [DuMuX] Error while installing dumux
Ok, thank you. Apparently, the constructions that we do in the CMakeLists.txt
of test/multidomain/boundary/stokesdarcy/1p_2p and
test/multidomain/boundary/stokesdarcy/1p2c_2p2c result in problems on your Mac.
As a temporary workaround to get things running, it should be ok to
comment/remove the line
add_subdirectory(stokesdarcy)
from test/multidomain/boundary/CMakeLists.txt, remove the folder build-cmake
from your dumux directory and run the script again.
Meanwhile, we will try to fix the problem in the offending CMakeLists.txt.
Kind regards
Bernd
On 07/16/2018 11:45 AM, Maria Bonto wrote:
Dear Bernd,
I started again from the beginning but I still get the same errors.
Regards,
María.
________________________________
De: Bernd Flemisch
<[email protected]><mailto:[email protected]>
Enviado: lunes, 16 de julio de 2018 11:34:33
Para: Maria Bonto; DuMuX User Forum
Asunto: Re: [DuMuX] Error while installing dumux
Can you maybe try to restart from scratch?
Kind regards
Bernd
On 07/16/2018 11:25 AM, Maria Bonto wrote:
I installed gfortran 4.9.2, but I still get errors. I attach the new console
output.
________________________________
De: Bernd Flemisch
<[email protected]><mailto:[email protected]>
Enviado: lunes, 16 de julio de 2018 10:50:26
Para: Maria Bonto
Asunto: Re: [DuMuX] Error while installing dumux
Ok, you need a Fortran compiler. On Mac, you might want to want to consider
https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4
[https://cdn.sstatic.net/Sites/scicomp/img/[email protected]?v=935a34102365]<https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4>
How should I install a Fortran compiler on a Mac? (OS X 10
...<https://scicomp.stackexchange.com/questions/2469/how-should-i-install-a-fortran-compiler-on-a-mac-os-x-10-x-x-4>
scicomp.stackexchange.com
Related question: State of the Mac OS in Scientific Computing and HPC A
significant number of software packages in computational science are written in
Fortran, and Fortran isn't going away.
Kind regards
Bernd
On 07/16/2018 10:37 AM, Maria Bonto wrote:
Dear Bernd,
Attached please find a txt. file with the console messages after running the
installation script.
Regards,
María.
________________________________
De: Bernd Flemisch
<[email protected]><mailto:[email protected]>
Enviado: lunes, 16 de julio de 2018 10:28:20
Para: DuMuX User Forum; Maria Bonto
Asunto: Re: [DuMuX] Error while installing dumux
Hi Maria,
can you please also post the console output that you get from the install
script or from running dunecontrol directly?
Kind regards
Bernd
On 07/16/2018 10:13 AM, Maria Bonto wrote:
Dear Sir/Madam,
I was trying to install dumux on a Mac OS X 10.10 for the dumux course but I
get the following error: failed to build the dune libraries.
I am attaching the error log file I get.
Thank you in advance.
Best regards,
María.
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--
_______________________________________________________________
Bernd Flemisch phone: +49 711 685 69162
IWS, Universität Stuttgart fax: +49 711 685 60430
Pfaffenwaldring 61 email:
[email protected]<mailto:[email protected]>
D-70569 Stuttgart url:
www.hydrosys.uni-stuttgart.de<http://www.hydrosys.uni-stuttgart.de>
_______________________________________________________________
--
_______________________________________________________________
Bernd Flemisch phone: +49 711 685 69162
IWS, Universität Stuttgart fax: +49 711 685 60430
Pfaffenwaldring 61 email:
[email protected]<mailto:[email protected]>
D-70569 Stuttgart url:
www.hydrosys.uni-stuttgart.de<http://www.hydrosys.uni-stuttgart.de>
_______________________________________________________________
--
_______________________________________________________________
Bernd Flemisch phone: +49 711 685 69162
IWS, Universität Stuttgart fax: +49 711 685 60430
Pfaffenwaldring 61 email:
[email protected]<mailto:[email protected]>
D-70569 Stuttgart url:
www.hydrosys.uni-stuttgart.de<http://www.hydrosys.uni-stuttgart.de>
_______________________________________________________________
--
_______________________________________________________________
Bernd Flemisch phone: +49 711 685 69162
IWS, Universität Stuttgart fax: +49 711 685 60430
Pfaffenwaldring 61 email:
[email protected]<mailto:[email protected]>
D-70569 Stuttgart url:
www.hydrosys.uni-stuttgart.de<http://www.hydrosys.uni-stuttgart.de>
_______________________________________________________________
--
_______________________________________________________________
Bernd Flemisch phone: +49 711 685 69162
IWS, Universität Stuttgart fax: +49 711 685 60430
Pfaffenwaldring 61 email:
[email protected]<mailto:[email protected]>
D-70569 Stuttgart url:
www.hydrosys.uni-stuttgart.de<http://www.hydrosys.uni-stuttgart.de>
_______________________________________________________________
--
_______________________________________________________________
Bernd Flemisch phone: +49 711 685 69162
IWS, Universität Stuttgart fax: +49 711 685 60430
Pfaffenwaldring 61 email:
[email protected]<mailto:[email protected]>
D-70569 Stuttgart url:
www.hydrosys.uni-stuttgart.de<http://www.hydrosys.uni-stuttgart.de>
_______________________________________________________________
_______________________________________________
Dumux mailing list
[email protected]
https://listserv.uni-stuttgart.de/mailman/listinfo/dumux
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