Hello Martin, I did this and the error occured again.
Greetings Kai Am Di., 16. Juni 2020 um 13:58 Uhr schrieb < [email protected]>: > Send Dumux mailing list submissions to > [email protected] > > To subscribe or unsubscribe via the World Wide Web, visit > https://listserv.uni-stuttgart.de/mailman/listinfo/dumux > or, via email, send a message with subject or body 'help' to > [email protected] > > You can reach the person managing the list at > [email protected] > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of Dumux digest..." > > > Today's Topics: > > 1. Re: Dumux Digest, Vol 112, Issue 10 (Kai Wendel) > 2. Re: Dumux Digest, Vol 112, Issue 10 (Martin Schneider) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Tue, 16 Jun 2020 12:37:42 +0200 > From: Kai Wendel <[email protected]> > To: [email protected] > Subject: Re: [DuMuX] Dumux Digest, Vol 112, Issue 10 > Message-ID: > < > cakhkb6y9vq-baehvybxapthn5e5qojugf2otdbhabkqcgg4...@mail.gmail.com> > Content-Type: text/plain; charset="utf-8" > > Hello Kilian, > > I tried this and the error message did not occur. Another strange thing is, > that it seems to be slower with mpirun than without. > > Regards > Kai > > Am Di., 16. Juni 2020 um 12:00 Uhr schrieb < > [email protected]>: > > > Send Dumux mailing list submissions to > > [email protected] > > > > To subscribe or unsubscribe via the World Wide Web, visit > > https://listserv.uni-stuttgart.de/mailman/listinfo/dumux > > or, via email, send a message with subject or body 'help' to > > [email protected] > > > > You can reach the person managing the list at > > [email protected] > > > > When replying, please edit your Subject line so it is more specific > > than "Re: Contents of Dumux digest..." > > > > > > Today's Topics: > > > > 1. Re: Problem when using mpirun on a cluster (Kilian Weishaupt) > > > > > > ---------------------------------------------------------------------- > > > > Message: 1 > > Date: Tue, 16 Jun 2020 07:49:40 +0200 > > From: Kilian Weishaupt <[email protected]> > > To: [email protected] > > Subject: Re: [DuMuX] Problem when using mpirun on a cluster > > Message-ID: > > <[email protected]> > > Content-Type: text/plain; charset="utf-8"; Format="flowed" > > > > Hi Kai, > > > > do you get the same error if you try to run the simulation locally on > > your computer, using e.g. only two cores? > > > > Regards > > Kilian > > > > Am 15.06.20 um 11:28 schrieb Kai Wendel: > > > Hello, > > > > > > when trying to run a parallel? simulation on a cluster by using > > > mpirun, I get the following error message: > > > Dune reported error: Dune::IOError > > > > [VectorP0VTKFunction:/temp/kaiw/DUMUX/dumux/dumux/io/vtkfunction.hh:99]: > > > VectorP0VTKFunction: size mismatch between field process rank (32160) > > > and mapper (17952) ---> Abort! > > > > > > I tried also to actualize all versions, but the problem remains. > > > I did the following commands: > > > > > > srun -n 6 --pty /bin/bash > > > srun mpirun -n 6 ?REMEDIATION_3D_cake > > > > > > Greetings > > > Kai Wendel > > > > > > _______________________________________________ > > > Dumux mailing list > > > [email protected] > > > https://listserv.uni-stuttgart.de/mailman/listinfo/dumux > > > > -- > > %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% > > Kilian Weishaupt M.Sc. > > Institut f?r Wasser- und Umweltsystemmodellierung (IWS) > > Lehrstuhl f?r Hydromechanik und Hydrosystemmodellierung > > Universit?t Stuttgart, Pfaffenwaldring 61, 70569 Stuttgart > > Email: [email protected] > > Telefon: 0049 711 685-60461 ** fax: 0049-711-685-60430 > > http://www.hydrosys.uni-stuttgart.de > > %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% > > > > -------------- next part -------------- > > An HTML attachment was scrubbed... > > URL: < > > > http://listserv.uni-stuttgart.de/pipermail/dumux/attachments/20200616/34f40f3d/attachment-0001.htm > > > > > > > ------------------------------ > > > > Subject: Digest Footer > > > > _______________________________________________ > > Dumux mailing list > > [email protected] > > https://listserv.uni-stuttgart.de/mailman/listinfo/dumux > > > > > > ------------------------------ > > > > End of Dumux Digest, Vol 112, Issue 10 > > ************************************** > > > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: < > http://listserv.uni-stuttgart.de/pipermail/dumux/attachments/20200616/26bc910f/attachment-0001.htm > > > > ------------------------------ > > Message: 2 > Date: Tue, 16 Jun 2020 13:57:54 +0200 > From: Martin Schneider <[email protected]> > To: DuMuX User Forum <[email protected]>, Kai Wendel > <[email protected]> > Subject: Re: [DuMuX] Dumux Digest, Vol 112, Issue 10 > Message-ID: > <[email protected]> > Content-Type: text/plain; charset="utf-8"; Format="flowed" > > Dear Kai, > > after you have executed > *srun -n 6 --pty /bin/bash** > *you have reserved 6 slots such that you can directly run > *mpirun -n 6 REMEDIATION_3D_cake* > > Does this help? > > Best regards, > Martin > > On 16.06.20 12:37, Kai Wendel wrote: > > Hello Kilian, > > > > I tried this and the error message did not occur. Another strange > > thing is, that it seems to be slower with mpirun than without. > > > > Regards > > Kai > > > > Am Di., 16. Juni 2020 um 12:00?Uhr schrieb > > <[email protected] > > <mailto:[email protected]>>: > > > > Send Dumux mailing list submissions to > > [email protected] > > <mailto:[email protected]> > > > > To subscribe or unsubscribe via the World Wide Web, visit > > https://listserv.uni-stuttgart.de/mailman/listinfo/dumux > > or, via email, send a message with subject or body 'help' to > > [email protected] > > <mailto:[email protected]> > > > > You can reach the person managing the list at > > [email protected] > > <mailto:[email protected]> > > > > When replying, please edit your Subject line so it is more specific > > than "Re: Contents of Dumux digest..." > > > > > > Today's Topics: > > > > ? ?1. Re: Problem when using mpirun on a cluster (Kilian Weishaupt) > > > > > > > ---------------------------------------------------------------------- > > > > Message: 1 > > Date: Tue, 16 Jun 2020 07:49:40 +0200 > > From: Kilian Weishaupt <[email protected] > > <mailto:[email protected]>> > > To: [email protected] > > <mailto:[email protected]> > > Subject: Re: [DuMuX] Problem when using mpirun on a cluster > > Message-ID: > > ? ? ? ? <[email protected] > > <mailto:[email protected]>> > > Content-Type: text/plain; charset="utf-8"; Format="flowed" > > > > Hi Kai, > > > > do you get the same error if you try to run the simulation locally on > > your computer, using e.g. only two cores? > > > > Regards > > Kilian > > > > Am 15.06.20 um 11:28 schrieb Kai Wendel: > > > Hello, > > > > > > when trying to run a parallel? simulation on a cluster by using > > > mpirun, I get the following error message: > > > Dune reported error: Dune::IOError > > > > > > [VectorP0VTKFunction:/temp/kaiw/DUMUX/dumux/dumux/io/vtkfunction.hh:99]: > > > > > VectorP0VTKFunction: size mismatch between field process rank > > (32160) > > > and mapper (17952) ---> Abort! > > > > > > I tried also to actualize all versions, but the problem remains. > > > I did the following commands: > > > > > > srun -n 6 --pty /bin/bash > > > srun mpirun -n 6 ?REMEDIATION_3D_cake > > > > > > Greetings > > > Kai Wendel > > > > > > _______________________________________________ > > > Dumux mailing list > > > [email protected] > > <mailto:[email protected]> > > > https://listserv.uni-stuttgart.de/mailman/listinfo/dumux > > > > -- > > %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% > > Kilian Weishaupt M.Sc. > > Institut f?r Wasser- und Umweltsystemmodellierung (IWS) > > Lehrstuhl f?r Hydromechanik und Hydrosystemmodellierung > > Universit?t Stuttgart, Pfaffenwaldring 61, 70569 Stuttgart > > Email: [email protected] > > <mailto:[email protected]> > > Telefon: 0049 711 685-60461 ** fax: 0049-711-685-60430 > > http://www.hydrosys.uni-stuttgart.de > > %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% > > > > -------------- next part -------------- > > An HTML attachment was scrubbed... > > URL: > > < > http://listserv.uni-stuttgart.de/pipermail/dumux/attachments/20200616/34f40f3d/attachment-0001.htm > > > > > > ------------------------------ > > > > Subject: Digest Footer > > > > _______________________________________________ > > Dumux mailing list > > [email protected] > > <mailto:[email protected]> > > https://listserv.uni-stuttgart.de/mailman/listinfo/dumux > > > > > > ------------------------------ > > > > End of Dumux Digest, Vol 112, Issue 10 > > ************************************** > > > > > > _______________________________________________ > > Dumux mailing list > > [email protected] > > https://listserv.uni-stuttgart.de/mailman/listinfo/dumux > > > -- > Dr.-Ing. Martin Schneider > University of Stuttgart > Institute for Modelling Hydraulic and Environmental Systems > Department of Hydromechanics and Modelling of Hydrosystems > Pfaffenwaldring 61 > D-70569 Stuttgart > Tel: (+49) 0711/ 685-69159 > Fax: (+49) 0711/ 685-60430 > E-Mail: [email protected] > > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: < > http://listserv.uni-stuttgart.de/pipermail/dumux/attachments/20200616/ae3eb8fc/attachment.htm > > > > ------------------------------ > > Subject: Digest Footer > > _______________________________________________ > Dumux mailing list > [email protected] > https://listserv.uni-stuttgart.de/mailman/listinfo/dumux > > > ------------------------------ > > End of Dumux Digest, Vol 112, Issue 11 > ************************************** >
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