Hello Community,
My name is Rucha Kunte and I am currently writing my master thesis.
I am trying to run the Weishaput2019a example according to the commands given
in the installation part. I am not able to execute the last run command and it
gives me multiple errors.
I have foam-grid installed as well.
I am attaching with this email a text file of my command window of Ubuntu. It
would be of great help to know how to fix this.
Thank you in Advance.
Best regards,
Rucha Kunte
kunt_ru@WF-030519:/mnt/c/Users/kunt_ru/Documents/Porenetworkflow$ git clone
https://git.iws.uni-stuttgart.de/dumux-pub/weishaupt2019a.git
Cloning into 'weishaupt2019a'...
remote: Enumerating objects: 169, done.
remote: Total 169 (delta 0), reused 0 (delta 0), pack-reused 169
Receiving objects: 100% (169/169), 186.00 KiB | 14.31 MiB/s, done.
Resolving deltas: 100% (44/44), done.
kunt_ru@WF-030519:/mnt/c/Users/kunt_ru/Documents/Porenetworkflow$ chmod u+x
weishaupt2019a/installWeishaupt2019a.sh
kunt_ru@WF-030519:/mnt/c/Users/kunt_ru/Documents/Porenetworkflow$
./weishaupt2019a/installWeishaupt2019a.sh
Cloning into 'dune-common'...
remote: Enumerating objects: 69716, done.
remote: Counting objects: 100% (1145/1145), done.
remote: Compressing objects: 100% (372/372), done.
remote: Total 69716 (delta 875), reused 1010 (delta 773), pack-reused 68571
Receiving objects: 100% (69716/69716), 17.87 MiB | 29.37 MiB/s, done.
Resolving deltas: 100% (51582/51582), done.
Updating files: 100% (489/489), done.
Already on 'master'
Your branch is up to date with 'origin/master'.
Updating files: 100% (418/418), done.
HEAD is now at 1e7fbb595 [!569] Let cmake disable search for modules with
pkg-config.
Cloning into 'dune-geometry'...
remote: Enumerating objects: 7443, done.
remote: Counting objects: 100% (739/739), done.
remote: Compressing objects: 100% (226/226), done.
remote: Total 7443 (delta 553), reused 671 (delta 513), pack-reused 6704
Receiving objects: 100% (7443/7443), 3.25 MiB | 32.32 MiB/s, done.
Resolving deltas: 100% (5284/5284), done.
Already on 'master'
Your branch is up to date with 'origin/master'.
HEAD is now at a0d6673 [!107] Add missing include.
Cloning into 'dune-grid'...
remote: Enumerating objects: 80799, done.
remote: Counting objects: 100% (1064/1064), done.
remote: Compressing objects: 100% (234/234), done.
remote: Total 80799 (delta 913), reused 920 (delta 830), pack-reused 79735
Receiving objects: 100% (80799/80799), 23.63 MiB | 12.36 MiB/s, done.
Resolving deltas: 100% (61715/61715), done.
Updating files: 100% (584/584), done.
Already on 'master'
Your branch is up to date with 'origin/master'.
Updating files: 100% (317/317), done.
HEAD is now at 8bb63866a [!307] Make Coordinates constructors take domain size
instead of element size
Cloning into 'dune-localfunctions'...
remote: Enumerating objects: 16471, done.
remote: Counting objects: 100% (760/760), done.
remote: Compressing objects: 100% (169/169), done.
remote: Total 16471 (delta 606), reused 743 (delta 591), pack-reused 15711
Receiving objects: 100% (16471/16471), 2.28 MiB | 20.47 MiB/s, done.
Resolving deltas: 100% (12657/12657), done.
Updating files: 100% (292/292), done.
Already on 'master'
Your branch is up to date with 'origin/master'.
Updating files: 100% (200/200), done.
HEAD is now at 6e57616d Merge branch 'remove-size-tmp' into 'master'
Cloning into 'dune-istl'...
remote: Enumerating objects: 21672, done.
remote: Counting objects: 100% (40/40), done.
remote: Compressing objects: 100% (26/26), done.
remote: Total 21672 (delta 21), reused 14 (delta 14), pack-reused 21632
Receiving objects: 100% (21672/21672), 3.60 MiB | 26.12 MiB/s, done.
Resolving deltas: 100% (15910/15910), done.
Updating files: 100% (198/198), done.
Already on 'master'
Your branch is up to date with 'origin/master'.
HEAD is now at d74bd9c2 [!228] Fix typos in comments
Cloning into 'dune-foamgrid'...
remote: Enumerating objects: 4195, done.
remote: Counting objects: 100% (101/101), done.
remote: Compressing objects: 100% (67/67), done.
remote: Total 4195 (delta 46), reused 82 (delta 33), pack-reused 4094
Receiving objects: 100% (4195/4195), 693.33 KiB | 22.37 MiB/s, done.
Resolving deltas: 100% (3011/3011), done.
Already on 'master'
Your branch is up to date with 'origin/master'.
HEAD is now at 0bc28af [!45] Cleanup/seed
Cloning into 'dune-subgrid'...
remote: Enumerating objects: 3641, done.
remote: Counting objects: 100% (3/3), done.
remote: Compressing objects: 100% (3/3), done.
remote: Total 3641 (delta 0), reused 3 (delta 0), pack-reused 3638
Receiving objects: 100% (3641/3641), 605.15 KiB | 20.87 MiB/s, done.
Resolving deltas: 100% (2466/2466), done.
Already on 'master'
Your branch is up to date with 'origin/master'.
HEAD is now at e0a3ab0 Decrease typedef clutter.
Cloning into 'dumux'...
remote: Enumerating objects: 222217, done.
remote: Counting objects: 100% (7445/7445), done.
remote: Compressing objects: 100% (893/893), done.
remote: Total 222217 (delta 7038), reused 6666 (delta 6550), pack-reused 214772
Receiving objects: 100% (222217/222217), 204.19 MiB | 3.89 MiB/s, done.
Resolving deltas: 100% (177141/177141), done.
Updating files: 100% (2888/2888), done.
Already on 'master'
Your branch is up to date with 'origin/master'.
Updating files: 100% (3883/3883), done.
HEAD is now at a192b9953 Merge branch 'fix/fuzzycomparedata-open-text-mode'
into 'master'
kunt_ru@WF-030519:/mnt/c/Users/kunt_ru/Documents/Porenetworkflow$
./dune-common/bin/dunecontrol --opts=dumux/optim.opts all
----- using default flags $CMAKE_FLAGS from
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dumux/optim.opts -----
WARNING: could not find module 'dune-alugrid',
module is also unknown to pkg-config.
Maybe you need to adjust PKG_CONFIG_PATH!
'dune-alugrid' is suggested by dumux
Skipping 'dune-alugrid'!
WARNING: could not find module 'dune-python',
module is also unknown to pkg-config.
Maybe you need to adjust PKG_CONFIG_PATH!
'dune-python' is suggested by dune-foamgrid
Skipping 'dune-python'!
WARNING: could not find module 'opm-grid',
module is also unknown to pkg-config.
Maybe you need to adjust PKG_CONFIG_PATH!
'opm-grid' is suggested by dumux
Skipping 'opm-grid'!
WARNING: could not find module 'dune-alugrid',
module is also unknown to pkg-config.
Maybe you need to adjust PKG_CONFIG_PATH!
'dune-alugrid' is suggested by dune-subgrid
Skipping 'dune-alugrid'!
WARNING: could not find module 'dune-spgrid',
module is also unknown to pkg-config.
Maybe you need to adjust PKG_CONFIG_PATH!
'dune-spgrid' is suggested by dumux
Skipping 'dune-spgrid'!
WARNING: could not find module 'dune-python',
module is also unknown to pkg-config.
Maybe you need to adjust PKG_CONFIG_PATH!
'dune-python' is suggested by dune-foamgrid
Skipping 'dune-python'!
WARNING: could not find module 'dune-alugrid',
module is also unknown to pkg-config.
Maybe you need to adjust PKG_CONFIG_PATH!
'dune-alugrid' is suggested by dune-subgrid
Skipping 'dune-alugrid'!
--- going to build dune-common dune-geometry dune-grid dune-localfunctions
dune-istl dune-foamgrid dune-subgrid dumux Weishaupt2019a ---
--- calling all for dune-common ---
--- calling vcsetup for dune-common ---
--> Installing Git pre-commit hook to enforce whitespace policy
--- calling configure for dune-common ---
cmake -DCMAKE_CXX_FLAGS=" -Wall -Wunused -Wmissing-include-dirs -Wcast-align
-Wno-sign-compare -Wno-unused-parameter -fno-strict-aliasing -fstrict-overflow
-fno-finite-math-only -O3 -march=native -DNDEBUG=1"
-DUG_DIR=ug_installation_path
"/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common"
-- The C compiler identification is GNU 9.4.0
-- The CXX compiler identification is GNU 9.4.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- The Fortran compiler identification is GNU 9.4.0
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/bin/gfortran - skipped
-- Performing Test cxx_std_flag_17
-- Performing Test cxx_std_flag_17 - Success
-- Performing Test compiler_supports_cxx17
-- Performing Test compiler_supports_cxx17 - Success
-- Performing Test HAS_ATTRIBUTE_UNUSED
-- Performing Test HAS_ATTRIBUTE_UNUSED - Success
-- Performing Test HAS_ATTRIBUTE_DEPRECATED
-- Performing Test HAS_ATTRIBUTE_DEPRECATED - Success
-- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG
-- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG - Success
-- Performing Test HAVE_IS_INDEXABLE_SUPPORT
-- Performing Test HAVE_IS_INDEXABLE_SUPPORT - Success
-- Performing Test DUNE_HAVE_CXX_CLASS_TEMPLATE_ARGUMENT_DEDUCTION
-- Performing Test DUNE_HAVE_CXX_CLASS_TEMPLATE_ARGUMENT_DEDUCTION - Success
-- Performing Test DUNE_HAVE_CXX_OPTIONAL
-- Performing Test DUNE_HAVE_CXX_OPTIONAL - Success
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- Found Threads: TRUE
-- Performing Test STDTHREAD_WORKS
-- Performing Test STDTHREAD_WORKS - Success
-- Performing Test DUNE_SUPPORTS_CXX_THROW_IN_CONSTEXPR
-- Performing Test DUNE_SUPPORTS_CXX_THROW_IN_CONSTEXPR - Success
-- Looking for C++ include experimental/type_traits
-- Looking for C++ include experimental/type_traits - found
-- Looking for std::make_unique<int>
-- Looking for std::make_unique<int> - found
-- Looking for std::move<std::bool_constant<true>>
-- Looking for std::move<std::bool_constant<true>> - found
-- Looking for std::apply<std::negate<int>,std::tuple<int>>
-- Looking for std::apply<std::negate<int>,std::tuple<int>> - found
-- Looking for std::experimental::make_array<int,int>
-- Looking for std::experimental::make_array<int,int> - found
-- Looking for std::move<std::experimental::detected_t<std::decay_t,int>>
-- Looking for std::move<std::experimental::detected_t<std::decay_t,int>> -
found
-- Performing Test HAVE_CXA_DEMANGLE
-- Performing Test HAVE_CXA_DEMANGLE - Success
-- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version
"3.1")
-- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found
version "3.1")
-- Found MPI_Fortran: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_usempif08.so
(found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- Detecting Fortran/C Interface
-- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling
-- Verifying Fortran/CXX Compiler Compatibility
-- Verifying Fortran/CXX Compiler Compatibility - Success
-- Could NOT find LATEX (missing: LATEX_COMPILER)
CMake Warning at cmake/modules/DuneDoc.cmake:84 (message):
Need latex to create documentation!
Call Stack (most recent call first):
cmake/modules/DuneMacros.cmake:729 (include)
CMakeLists.txt:17 (dune_project)
CMake Warning at cmake/modules/DuneDoc.cmake:88 (message):
Need bibtex to create documentation!
Call Stack (most recent call first):
cmake/modules/DuneMacros.cmake:729 (include)
CMakeLists.txt:17 (dune_project)
CMake Warning at cmake/modules/DuneDoc.cmake:92 (message):
Need makeindex to create documentation!
Call Stack (most recent call first):
cmake/modules/DuneMacros.cmake:729 (include)
CMakeLists.txt:17 (dune_project)
CMake Warning at cmake/modules/DuneDoc.cmake:96 (message):
Need imagemagick to create latex documentation!
Call Stack (most recent call first):
cmake/modules/DuneMacros.cmake:729 (include)
CMakeLists.txt:17 (dune_project)
-- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE)
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1")
-- Searching for macro file 'DuneCommonMacros' for module 'dune-common'.
-- Performing tests specific to dune-common from file
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- Set Minimal Debug Level to 4
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - not found
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - found
-- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so
-- Looking for Fortran cheev
-- Looking for Fortran cheev - not found
-- Looking for Fortran cheev
-- Looking for Fortran cheev - not found
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- Found LAPACK:
/usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so
-- Looking for C++ include gmpxx.h
-- Looking for C++ include gmpxx.h - not found
-- Could NOT find GMP (missing: GMPXX_INCLUDE_DIR GMP_LIB GMPXX_LIB
GMP_HEADER_WORKS GMPXX_LIB_WORKS)
-- Looking for quadmath.h
-- Looking for quadmath.h - found
-- Performing Test QUADMATH_COMPILES
-- Performing Test QUADMATH_COMPILES - Success
-- Found QuadMath: 1
-- Looking for sys/mman.h
-- Looking for sys/mman.h - found
-- Performing Test HAVE_MPROTECT
-- Performing Test HAVE_MPROTECT - Success
-- Library dir: TBB_LIBRARY_DIR-NOTFOUND
-- Performing Test TBB_COMPILE_TEST
-- Performing Test TBB_COMPILE_TEST - Failed
-- Could NOT find TBB (missing: TBB_INCLUDE_DIRS TBB_LIBRARIES TBB_COMPILE_TEST)
-- Could NOT find Vc (missing: Vc_DIR)
-- Found PythonInterp: /usr/bin/python3.8 (found version "3.8.10")
-- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.8.so (found version
"3.8.10")
-- Found pip_/usr/bin/python3.8: TRUE
-- Parsing looptest.hh.in for embedded templates
-- Parsing looptest.cc.in for embedded templates
-- Generating looptest_vector.cc.in -> looptest_vector_char.cc
-- Generating looptest_vector.cc.in -> looptest_vector_unsigned_char.cc
-- Generating looptest_vector.cc.in -> looptest_vector_signed_char.cc
-- Generating looptest_vector.cc.in -> looptest_vector_short.cc
-- Generating looptest_vector.cc.in -> looptest_vector_int.cc
-- Generating looptest_vector.cc.in -> looptest_vector_long.cc
-- Generating looptest_vector.cc.in -> looptest_vector_long_long.cc
-- Generating looptest_vector.cc.in -> looptest_vector_unsigned_short.cc
-- Generating looptest_vector.cc.in -> looptest_vector_unsigned.cc
-- Generating looptest_vector.cc.in -> looptest_vector_unsigned_long.cc
-- Generating looptest_vector.cc.in -> looptest_vector_unsigned_long_long.cc
-- Generating looptest_vector.cc.in -> looptest_vector_wchar_t.cc
-- Generating looptest_vector.cc.in -> looptest_vector_char16_t.cc
-- Generating looptest_vector.cc.in -> looptest_vector_char32_t.cc
-- Generating looptest_vector.cc.in -> looptest_vector_bool.cc
-- Generating looptest_vector.cc.in -> looptest_vector_float.cc
-- Generating looptest_vector.cc.in -> looptest_vector_double.cc
-- Generating looptest_vector.cc.in -> looptest_vector_long_double.cc
-- Generating looptest_vector.cc.in -> looptest_vector_std_complex_float.cc
-- Generating looptest_vector.cc.in -> looptest_vector_std_complex_double.cc
-- Generating looptest_vector.cc.in ->
looptest_vector_std_complex_long_double.cc
-- Writing looptest.hh
-- Writing looptest.cc
-- Parsing standardtest.hh.in for embedded templates
-- Parsing standardtest.cc.in for embedded templates
-- Generating standardtest_vector.cc.in -> standardtest_vector_char.cc
-- Generating standardtest_vector.cc.in -> standardtest_vector_unsigned_char.cc
-- Generating standardtest_vector.cc.in -> standardtest_vector_signed_char.cc
-- Generating standardtest_vector.cc.in -> standardtest_vector_short.cc
-- Generating standardtest_vector.cc.in -> standardtest_vector_int.cc
-- Generating standardtest_vector.cc.in -> standardtest_vector_long.cc
-- Generating standardtest_vector.cc.in -> standardtest_vector_long_long.cc
-- Generating standardtest_vector.cc.in -> standardtest_vector_unsigned_short.cc
-- Generating standardtest_vector.cc.in -> standardtest_vector_unsigned.cc
-- Generating standardtest_vector.cc.in -> standardtest_vector_unsigned_long.cc
-- Generating standardtest_vector.cc.in ->
standardtest_vector_unsigned_long_long.cc
-- Generating standardtest_vector.cc.in -> standardtest_vector_wchar_t.cc
-- Generating standardtest_vector.cc.in -> standardtest_vector_char16_t.cc
-- Generating standardtest_vector.cc.in -> standardtest_vector_char32_t.cc
-- Generating standardtest_vector.cc.in -> standardtest_vector_bool.cc
-- Generating standardtest_vector.cc.in -> standardtest_vector_float.cc
-- Generating standardtest_vector.cc.in -> standardtest_vector_double.cc
-- Generating standardtest_vector.cc.in -> standardtest_vector_long_double.cc
-- Generating standardtest_vector.cc.in ->
standardtest_vector_std_complex_float.cc
-- Generating standardtest_vector.cc.in ->
standardtest_vector_std_complex_double.cc
-- Generating standardtest_vector.cc.in ->
standardtest_vector_std_complex_long_double.cc
-- Writing standardtest.hh
-- Writing standardtest.cc
-- Parsing vctest.hh.in for embedded templates
-- Parsing vctest.cc.in for embedded templates
-- Generating vctest_vector.cc.in -> vctest_vector_std_int16_t.cc
-- Generating vctest_mask.cc.in -> vctest_mask_std_int16_t.cc
-- Generating vctest_vector.cc.in -> vctest_vector_std_uint16_t.cc
-- Generating vctest_mask.cc.in -> vctest_mask_std_uint16_t.cc
-- Generating vctest_vector.cc.in -> vctest_vector_std_int32_t.cc
-- Generating vctest_mask.cc.in -> vctest_mask_std_int32_t.cc
-- Generating vctest_vector.cc.in -> vctest_vector_std_uint32_t.cc
-- Generating vctest_mask.cc.in -> vctest_mask_std_uint32_t.cc
-- Generating vctest_vector.cc.in -> vctest_vector_float.cc
-- Generating vctest_mask.cc.in -> vctest_mask_float.cc
-- Generating vctest_vector.cc.in -> vctest_vector_double.cc
-- Generating vctest_mask.cc.in -> vctest_mask_double.cc
-- Generating vctest_simdarray.cc.in -> vctest_simdarray_std_int16_t_4.cc
-- Generating vctest_simdmaskarray.cc.in ->
vctest_simdmaskarray_std_int16_t_4.cc
-- Generating vctest_simdarray.cc.in -> vctest_simdarray_std_int16_t_8.cc
-- Generating vctest_simdmaskarray.cc.in ->
vctest_simdmaskarray_std_int16_t_8.cc
-- Generating vctest_simdarray.cc.in -> vctest_simdarray_std_uint16_t_4.cc
-- Generating vctest_simdmaskarray.cc.in ->
vctest_simdmaskarray_std_uint16_t_4.cc
-- Generating vctest_simdarray.cc.in -> vctest_simdarray_std_uint16_t_8.cc
-- Generating vctest_simdmaskarray.cc.in ->
vctest_simdmaskarray_std_uint16_t_8.cc
-- Generating vctest_simdarray.cc.in -> vctest_simdarray_std_int32_t_4.cc
-- Generating vctest_simdmaskarray.cc.in ->
vctest_simdmaskarray_std_int32_t_4.cc
-- Generating vctest_simdarray.cc.in -> vctest_simdarray_std_int32_t_8.cc
-- Generating vctest_simdmaskarray.cc.in ->
vctest_simdmaskarray_std_int32_t_8.cc
-- Generating vctest_simdarray.cc.in -> vctest_simdarray_std_uint32_t_4.cc
-- Generating vctest_simdmaskarray.cc.in ->
vctest_simdmaskarray_std_uint32_t_4.cc
-- Generating vctest_simdarray.cc.in -> vctest_simdarray_std_uint32_t_8.cc
-- Generating vctest_simdmaskarray.cc.in ->
vctest_simdmaskarray_std_uint32_t_8.cc
-- Generating vctest_simdarray.cc.in -> vctest_simdarray_float_4.cc
-- Generating vctest_simdmaskarray.cc.in -> vctest_simdmaskarray_float_4.cc
-- Generating vctest_simdarray.cc.in -> vctest_simdarray_float_8.cc
-- Generating vctest_simdmaskarray.cc.in -> vctest_simdmaskarray_float_8.cc
-- Generating vctest_simdarray.cc.in -> vctest_simdarray_double_4.cc
-- Generating vctest_simdmaskarray.cc.in -> vctest_simdmaskarray_double_4.cc
-- Generating vctest_simdarray.cc.in -> vctest_simdarray_double_8.cc
-- Generating vctest_simdmaskarray.cc.in -> vctest_simdmaskarray_double_8.cc
-- Writing vctest.hh
-- Writing vctest.cc
-- Using scripts from
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/scripts for
creating doxygen stuff.
-- Skipping building CMake API documentation (Sphinx was not found!)
CMake Warning at cmake/modules/DuneDoc.cmake:170 (message):
Not adding rule to create as LaTeX is not usable!
Call Stack (most recent call first):
doc/comm/CMakeLists.txt:12 (dune_add_latex_document)
-- Not adding custom target for config.h generation
-- The following OPTIONAL packages have been found:
* MPI, Message Passing Interface library
Parallel programming on multiple processors
* PkgConfig, Unified interface for querying installed libraries
To find Dune module dependencies
* BLAS, fast linear algebra routines
* Threads, Multi-threading library
* LAPACK, fast linear algebra routines
* QuadMath, GCC Quad-Precision library
* PythonInterp
* PythonLibs
-- The following OPTIONAL packages have not been found:
* LATEX, Type setting system
To generate the documentation
* Sphinx, Documentation generator, <www.sphinx-doc.org>
To generate the documentation from CMake and Python sources
* Doxygen, Class documentation generator, <www.doxygen.org>
To generate the class documentation from C++ sources
* GMP, GNU multi-precision library including the C++ bindings GMPxx
Multi-precision quadrature rules, basis function evaluation etc.
* Inkscape, converts SVG images, <www.inkscape.org>
To generate the documentation with LaTeX
* TBB, Threading Building Blocks library
Parallel programming on multi-core processors
* Vc, C++ Vectorization library, <https://github.com/VcDevel/Vc>
For use of SIMD instructions
-- Configuring done
CMake Warning (dev) in CMakeLists.txt:
Policy CMP0087 is not set: Install CODE|SCRIPT allow the use of generator
expressions. Run "cmake --help-policy CMP0087" for policy details. Use
the cmake_policy command to set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
UG_DIR
-- Build files have been written to:
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/build-cmake
--- calling make for dune-common ---
build directory: build-cmake
cmake --build . --
[ 0%] Building CXX object dune/common/CMakeFiles/dunecommon.dir/debugalign.cc.o
[ 14%] Building CXX object
dune/common/CMakeFiles/dunecommon.dir/debugallocator.cc.o
[ 14%] Building CXX object
dune/common/CMakeFiles/dunecommon.dir/dynmatrixev.cc.o
[ 14%] Building CXX object dune/common/CMakeFiles/dunecommon.dir/exceptions.cc.o
[ 28%] Building CXX object dune/common/CMakeFiles/dunecommon.dir/fmatrixev.cc.o
[ 28%] Building CXX object dune/common/CMakeFiles/dunecommon.dir/ios_state.cc.o
[ 42%] Building CXX object
dune/common/CMakeFiles/dunecommon.dir/parametertree.cc.o
[ 42%] Building CXX object
dune/common/CMakeFiles/dunecommon.dir/parametertreeparser.cc.o
[ 42%] Building CXX object dune/common/CMakeFiles/dunecommon.dir/path.cc.o
[ 57%] Building CXX object dune/common/CMakeFiles/dunecommon.dir/simd/test.cc.o
[ 57%] Building CXX object dune/common/CMakeFiles/dunecommon.dir/stdstreams.cc.o
[ 71%] Building CXX object dune/common/CMakeFiles/dunecommon.dir/stdthread.cc.o
[ 71%] Linking CXX static library ../../lib/libdunecommon.a
[ 71%] Built target dunecommon
[ 71%] Building CXX object doc/comm/CMakeFiles/poosc08.dir/poosc08.cc.o
[ 71%] Linking CXX executable poosc08
[ 71%] Built target poosc08
[ 85%] Building CXX object
doc/comm/CMakeFiles/poosc08_test.dir/poosc08_test.cc.o
[ 85%] Linking CXX executable poosc08_test
[ 85%] Built target poosc08_test
[ 85%] Building CXX object doc/comm/CMakeFiles/indexset.dir/indexset.cc.o
[100%] Linking CXX executable indexset
[100%] Built target indexset
--- dune-common done ---
--- calling all for dune-geometry ---
--- calling vcsetup for dune-geometry ---
--> Installing Git pre-commit hook to enforce whitespace policy
--- calling configure for dune-geometry ---
cmake
"-Ddune-common_DIR=/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/build-cmake"
-DCMAKE_CXX_FLAGS=" -Wall -Wunused -Wmissing-include-dirs -Wcast-align
-Wno-sign-compare -Wno-unused-parameter -fno-strict-aliasing -fstrict-overflow
-fno-finite-math-only -O3 -march=native -DNDEBUG=1"
-DUG_DIR=ug_installation_path
"/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-geometry"
-- The C compiler identification is GNU 9.4.0
-- The CXX compiler identification is GNU 9.4.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Dependencies for dune-geometry: dune-common (>= 2.6)
-- The Fortran compiler identification is GNU 9.4.0
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/bin/gfortran - skipped
-- Performing Test cxx_std_flag_17
-- Performing Test cxx_std_flag_17 - Success
-- Performing Test compiler_supports_cxx17
-- Performing Test compiler_supports_cxx17 - Success
-- Performing Test HAS_ATTRIBUTE_UNUSED
-- Performing Test HAS_ATTRIBUTE_UNUSED - Success
-- Performing Test HAS_ATTRIBUTE_DEPRECATED
-- Performing Test HAS_ATTRIBUTE_DEPRECATED - Success
-- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG
-- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG - Success
-- Performing Test HAVE_IS_INDEXABLE_SUPPORT
-- Performing Test HAVE_IS_INDEXABLE_SUPPORT - Success
-- Performing Test DUNE_HAVE_CXX_CLASS_TEMPLATE_ARGUMENT_DEDUCTION
-- Performing Test DUNE_HAVE_CXX_CLASS_TEMPLATE_ARGUMENT_DEDUCTION - Success
-- Performing Test DUNE_HAVE_CXX_OPTIONAL
-- Performing Test DUNE_HAVE_CXX_OPTIONAL - Success
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- Found Threads: TRUE
-- Performing Test STDTHREAD_WORKS
-- Performing Test STDTHREAD_WORKS - Success
-- Performing Test DUNE_SUPPORTS_CXX_THROW_IN_CONSTEXPR
-- Performing Test DUNE_SUPPORTS_CXX_THROW_IN_CONSTEXPR - Success
-- Looking for C++ include experimental/type_traits
-- Looking for C++ include experimental/type_traits - found
-- Looking for std::make_unique<int>
-- Looking for std::make_unique<int> - found
-- Looking for std::move<std::bool_constant<true>>
-- Looking for std::move<std::bool_constant<true>> - found
-- Looking for std::apply<std::negate<int>,std::tuple<int>>
-- Looking for std::apply<std::negate<int>,std::tuple<int>> - found
-- Looking for std::experimental::make_array<int,int>
-- Looking for std::experimental::make_array<int,int> - found
-- Looking for std::move<std::experimental::detected_t<std::decay_t,int>>
-- Looking for std::move<std::experimental::detected_t<std::decay_t,int>> -
found
-- Performing Test HAVE_CXA_DEMANGLE
-- Performing Test HAVE_CXA_DEMANGLE - Success
-- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version
"3.1")
-- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found
version "3.1")
-- Found MPI_Fortran: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_usempif08.so
(found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- Detecting Fortran/C Interface
-- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling
-- Verifying Fortran/CXX Compiler Compatibility
-- Verifying Fortran/CXX Compiler Compatibility - Success
-- Could NOT find LATEX (missing: LATEX_COMPILER)
CMake Warning at
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/modules/DuneDoc.cmake:84
(message):
Need latex to create documentation!
Call Stack (most recent call first):
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/modules/DuneMacros.cmake:729
(include)
CMakeLists.txt:21 (dune_project)
CMake Warning at
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/modules/DuneDoc.cmake:88
(message):
Need bibtex to create documentation!
Call Stack (most recent call first):
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/modules/DuneMacros.cmake:729
(include)
CMakeLists.txt:21 (dune_project)
CMake Warning at
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/modules/DuneDoc.cmake:92
(message):
Need makeindex to create documentation!
Call Stack (most recent call first):
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/modules/DuneMacros.cmake:729
(include)
CMakeLists.txt:21 (dune_project)
CMake Warning at
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/modules/DuneDoc.cmake:96
(message):
Need imagemagick to create latex documentation!
Call Stack (most recent call first):
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/modules/DuneMacros.cmake:729
(include)
CMakeLists.txt:21 (dune_project)
-- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE)
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1")
-- Searching for macro file 'DuneCommonMacros' for module 'dune-common'.
-- Performing tests specific to dune-common from file
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- Set Minimal Debug Level to 4
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - not found
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - found
-- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so
-- Looking for Fortran cheev
-- Looking for Fortran cheev - not found
-- Looking for Fortran cheev
-- Looking for Fortran cheev - not found
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- Found LAPACK:
/usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so
-- Looking for C++ include gmpxx.h
-- Looking for C++ include gmpxx.h - not found
-- Could NOT find GMP (missing: GMPXX_INCLUDE_DIR GMP_LIB GMPXX_LIB
GMP_HEADER_WORKS GMPXX_LIB_WORKS)
-- Looking for quadmath.h
-- Looking for quadmath.h - found
-- Performing Test QUADMATH_COMPILES
-- Performing Test QUADMATH_COMPILES - Success
-- Found QuadMath: 1
-- Looking for sys/mman.h
-- Looking for sys/mman.h - found
-- Performing Test HAVE_MPROTECT
-- Performing Test HAVE_MPROTECT - Success
-- Library dir: TBB_LIBRARY_DIR-NOTFOUND
-- Performing Test TBB_COMPILE_TEST
-- Performing Test TBB_COMPILE_TEST - Failed
-- Could NOT find TBB (missing: TBB_INCLUDE_DIRS TBB_LIBRARIES TBB_COMPILE_TEST)
-- Could NOT find Vc (missing: Vc_DIR)
-- Found PythonInterp: /usr/bin/python3.8 (found version "3.8.10")
-- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.8.so (found version
"3.8.10")
-- Found pip_/usr/bin/python3.8: TRUE
-- Setting
dune-common_INCLUDE_DIRS=/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Searching for macro file 'DuneGeometryMacros' for module 'dune-geometry'.
-- No module specific tests perfomed for module 'dune-geometry' because macro
file 'DuneGeometryMacros.cmake' not found in
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-geometry/cmake/modules;/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/modules.
-- Using scripts from
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/scripts for
creating doxygen stuff.
CMake Warning at
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/modules/DuneDoc.cmake:170
(message):
Not adding rule to create as LaTeX is not usable!
Call Stack (most recent call first):
doc/refinement/CMakeLists.txt:8 (dune_add_latex_document)
-- Adding custom target for config.h generation
-- The following OPTIONAL packages have been found:
* MPI, Message Passing Interface library
Parallel programming on multiple processors
* PkgConfig, Unified interface for querying installed libraries
To find Dune module dependencies
* BLAS, fast linear algebra routines
* Threads, Multi-threading library
* LAPACK, fast linear algebra routines
* QuadMath, GCC Quad-Precision library
* PythonInterp
* PythonLibs
-- The following REQUIRED packages have been found:
* dune-common
-- The following OPTIONAL packages have not been found:
* LATEX, Type setting system
To generate the documentation
* Sphinx, Documentation generator, <www.sphinx-doc.org>
To generate the documentation from CMake and Python sources
* Doxygen, Class documentation generator, <www.doxygen.org>
To generate the class documentation from C++ sources
* GMP, GNU multi-precision library including the C++ bindings GMPxx
Multi-precision quadrature rules, basis function evaluation etc.
* Inkscape, converts SVG images, <www.inkscape.org>
To generate the documentation with LaTeX
* TBB, Threading Building Blocks library
Parallel programming on multi-core processors
* Vc, C++ Vectorization library, <https://github.com/VcDevel/Vc>
For use of SIMD instructions
-- Configuring done
CMake Warning (dev) in CMakeLists.txt:
Policy CMP0087 is not set: Install CODE|SCRIPT allow the use of generator
expressions. Run "cmake --help-policy CMP0087" for policy details. Use
the cmake_policy command to set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
UG_DIR
-- Build files have been written to:
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-geometry/build-cmake
--- calling make for dune-geometry ---
build directory: build-cmake
cmake --build . --
[ 14%] Building CXX object
lib/CMakeFiles/dunegeometry.dir/__/dune/geometry/referenceelementimplementation.cc.o
[ 28%] Building CXX object
lib/CMakeFiles/dunegeometry.dir/__/dune/geometry/quadraturerules/gauss.cc.o
[ 42%] Building CXX object
lib/CMakeFiles/dunegeometry.dir/__/dune/geometry/quadraturerules/jacobi_1_0.cc.o
[ 57%] Building CXX object
lib/CMakeFiles/dunegeometry.dir/__/dune/geometry/quadraturerules/jacobi_2_0.cc.o
[ 71%] Building CXX object
lib/CMakeFiles/dunegeometry.dir/__/dune/geometry/quadraturerules/quadraturerules.cc.o
[ 85%] Building CXX object
lib/CMakeFiles/dunegeometry.dir/__/dune/geometry/quadraturerules/gausslobatto.cc.o
[100%] Linking CXX static library libdunegeometry.a
[100%] Built target dunegeometry
--- dune-geometry done ---
--- calling all for dune-grid ---
--- calling vcsetup for dune-grid ---
--> Installing Git pre-commit hook to enforce whitespace policy
--- calling configure for dune-grid ---
cmake
"-Ddune-common_DIR=/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/build-cmake"
"-Ddune-geometry_DIR=/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-geometry/build-cmake"
"-Ddune-uggrid_DIR=/usr/lib/x86_64-linux-gnu/cmake/dune-uggrid"
-DCMAKE_CXX_FLAGS=" -Wall -Wunused -Wmissing-include-dirs -Wcast-align
-Wno-sign-compare -Wno-unused-parameter -fno-strict-aliasing -fstrict-overflow
-fno-finite-math-only -O3 -march=native -DNDEBUG=1"
-DUG_DIR=ug_installation_path
"/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid"
-- The C compiler identification is GNU 9.4.0
-- The CXX compiler identification is GNU 9.4.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Dependencies for dune-grid: dune-geometry (>= 2.6)
-- Suggestions for dune-grid: dune-uggrid (>=2.6)
-- Dependencies for dune-geometry: dune-common (>= 2.6)
-- Dependencies for dune-uggrid: dune-common
-- The Fortran compiler identification is GNU 9.4.0
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/bin/gfortran - skipped
-- Performing Test cxx_std_flag_17
-- Performing Test cxx_std_flag_17 - Success
-- Performing Test compiler_supports_cxx17
-- Performing Test compiler_supports_cxx17 - Success
-- Performing Test HAS_ATTRIBUTE_UNUSED
-- Performing Test HAS_ATTRIBUTE_UNUSED - Success
-- Performing Test HAS_ATTRIBUTE_DEPRECATED
-- Performing Test HAS_ATTRIBUTE_DEPRECATED - Success
-- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG
-- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG - Success
-- Performing Test HAVE_IS_INDEXABLE_SUPPORT
-- Performing Test HAVE_IS_INDEXABLE_SUPPORT - Success
-- Performing Test DUNE_HAVE_CXX_CLASS_TEMPLATE_ARGUMENT_DEDUCTION
-- Performing Test DUNE_HAVE_CXX_CLASS_TEMPLATE_ARGUMENT_DEDUCTION - Success
-- Performing Test DUNE_HAVE_CXX_OPTIONAL
-- Performing Test DUNE_HAVE_CXX_OPTIONAL - Success
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- Found Threads: TRUE
-- Performing Test STDTHREAD_WORKS
-- Performing Test STDTHREAD_WORKS - Success
-- Performing Test DUNE_SUPPORTS_CXX_THROW_IN_CONSTEXPR
-- Performing Test DUNE_SUPPORTS_CXX_THROW_IN_CONSTEXPR - Success
-- Looking for C++ include experimental/type_traits
-- Looking for C++ include experimental/type_traits - found
-- Looking for std::make_unique<int>
-- Looking for std::make_unique<int> - found
-- Looking for std::move<std::bool_constant<true>>
-- Looking for std::move<std::bool_constant<true>> - found
-- Looking for std::apply<std::negate<int>,std::tuple<int>>
-- Looking for std::apply<std::negate<int>,std::tuple<int>> - found
-- Looking for std::experimental::make_array<int,int>
-- Looking for std::experimental::make_array<int,int> - found
-- Looking for std::move<std::experimental::detected_t<std::decay_t,int>>
-- Looking for std::move<std::experimental::detected_t<std::decay_t,int>> -
found
-- Performing Test HAVE_CXA_DEMANGLE
-- Performing Test HAVE_CXA_DEMANGLE - Success
-- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version
"3.1")
-- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found
version "3.1")
-- Found MPI_Fortran: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_usempif08.so
(found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- Detecting Fortran/C Interface
-- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling
-- Verifying Fortran/CXX Compiler Compatibility
-- Verifying Fortran/CXX Compiler Compatibility - Success
-- Could NOT find LATEX (missing: LATEX_COMPILER)
CMake Warning at /usr/share/dune/cmake/modules/DuneDoc.cmake:84 (message):
Need latex to create documentation!
Call Stack (most recent call first):
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/modules/DuneMacros.cmake:729
(include)
CMakeLists.txt:22 (dune_project)
CMake Warning at /usr/share/dune/cmake/modules/DuneDoc.cmake:88 (message):
Need bibtex to create documentation!
Call Stack (most recent call first):
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/modules/DuneMacros.cmake:729
(include)
CMakeLists.txt:22 (dune_project)
CMake Warning at /usr/share/dune/cmake/modules/DuneDoc.cmake:92 (message):
Need makeindex to create documentation!
Call Stack (most recent call first):
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/modules/DuneMacros.cmake:729
(include)
CMakeLists.txt:22 (dune_project)
CMake Warning at /usr/share/dune/cmake/modules/DuneDoc.cmake:96 (message):
Need imagemagick to create latex documentation!
Call Stack (most recent call first):
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/modules/DuneMacros.cmake:729
(include)
CMakeLists.txt:22 (dune_project)
-- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE)
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1")
-- Searching for macro file 'DuneCommonMacros' for module 'dune-common'.
-- Performing tests specific to dune-common from file
/usr/share/dune/cmake/modules/DuneCommonMacros.cmake.
-- Set Minimal Debug Level to 4
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - not found
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - found
-- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so
-- Looking for Fortran cheev
-- Looking for Fortran cheev - not found
-- Looking for Fortran cheev
-- Looking for Fortran cheev - not found
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- Found LAPACK:
/usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so
-- Looking for C++ include gmpxx.h
-- Looking for C++ include gmpxx.h - not found
-- Could NOT find GMP (missing: GMPXX_INCLUDE_DIR GMP_LIB GMPXX_LIB
GMP_HEADER_WORKS GMPXX_LIB_WORKS)
-- Looking for sys/mman.h
-- Looking for sys/mman.h - found
-- Performing Test HAVE_MPROTECT
-- Performing Test HAVE_MPROTECT - Success
-- Library dir: TBB_LIBRARY_DIR-NOTFOUND
-- Performing Test TBB_COMPILE_TEST
-- Performing Test TBB_COMPILE_TEST - Failed
-- Could NOT find TBB (missing: TBB_INCLUDE_DIRS TBB_LIBRARIES TBB_COMPILE_TEST)
-- Could NOT find Vc (missing: Vc_DIR)
-- Found PythonInterp: /usr/bin/python3.8 (found version "3.8.10")
-- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.8.so (found version
"3.8.10")
-- Found pip_/usr/bin/python3.8: TRUE
-- Setting
dune-common_INCLUDE_DIRS=/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Searching for macro file 'DuneUggridMacros' for module 'dune-uggrid'.
-- Performing tests specific to dune-uggrid from file
/usr/share/dune/cmake/modules/DuneUggridMacros.cmake.
-- Looking for rpc/rpc.h
-- Looking for rpc/rpc.h - found
-- Setting dune-uggrid_INCLUDE_DIRS=/usr/include
-- Setting dune-uggrid_LIBRARIES=ugL;ugS2;ugS3
-- Searching for macro file 'DuneGeometryMacros' for module 'dune-geometry'.
-- No module specific tests perfomed for module 'dune-geometry' because macro
file 'DuneGeometryMacros.cmake' not found in
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/cmake/modules;/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-geometry/cmake/modules;/usr/share/dune/cmake/modules;/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/modules.
-- Setting
dune-geometry_INCLUDE_DIRS=/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-geometry
-- Setting dune-geometry_LIBRARIES=dunegeometry
-- Searching for macro file 'DuneGridMacros' for module 'dune-grid'.
-- Performing tests specific to dune-grid from file
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/cmake/modules/DuneGridMacros.cmake.
-- Looking for mkstemp
-- Looking for mkstemp - found
-- Looking for metis.h
-- Looking for metis.h - not found
-- Could NOT find METIS (missing: METIS_INCLUDE_DIR METIS_LIBRARY
HAVE_METIS_PARTGRAPHKWAY)
-- Looking for parmetis.h
-- Looking for parmetis.h - not found
CMake Warning at /usr/share/dune/cmake/modules/FindParMETIS.cmake:82 (message):
metis.h is missing, you have to copy it manually next to parmetis.h
Call Stack (most recent call first):
cmake/modules/DuneGridMacros.cmake:15 (find_package)
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/modules/DuneMacros.cmake:583
(include)
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/modules/DuneMacros.cmake:735
(dune_process_dependency_macros)
CMakeLists.txt:22 (dune_project)
-- Could NOT find ParMETIS (missing: PARMETIS_INCLUDE_DIR PARMETIS_LIBRARY
HAVE_PARMETIS)
-- Looking for include file alberta/alberta.h
-- Looking for include file alberta/alberta.h - found
-- Performing Test ALBERTA_IS_VERSION_3
-- Performing Test ALBERTA_IS_VERSION_3 - Success
-- Looking for alberta_calloc in
/usr/lib/x86_64-linux-gnu/libalberta_utilities.so
-- Looking for alberta_calloc in
/usr/lib/x86_64-linux-gnu/libalberta_utilities.so - found
-- Looking for mesh_traverse in /usr/lib/x86_64-linux-gnu/libalberta_1d.so
-- Looking for mesh_traverse in /usr/lib/x86_64-linux-gnu/libalberta_1d.so -
found
-- Looking for mesh_traverse in /usr/lib/x86_64-linux-gnu/libalberta_2d.so
-- Looking for mesh_traverse in /usr/lib/x86_64-linux-gnu/libalberta_2d.so -
found
-- Looking for mesh_traverse in /usr/lib/x86_64-linux-gnu/libalberta_3d.so
-- Looking for mesh_traverse in /usr/lib/x86_64-linux-gnu/libalberta_3d.so -
found
-- Found alberta libraries for dimensions 1;2;3
CMake Warning (dev) at
/usr/share/cmake-3.23/Modules/FindPackageHandleStandardArgs.cmake:438 (message):
The package name passed to `find_package_handle_standard_args` (PkgConfig)
does not match the name of the calling package (Psurface). This can lead
to problems in calling code that expects `find_package` result variables
(e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
/usr/share/cmake-3.23/Modules/FindPkgConfig.cmake:99
(find_package_handle_standard_args)
cmake/modules/FindPsurface.cmake:63 (include)
cmake/modules/DuneGridMacros.cmake:20 (find_package)
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/modules/DuneMacros.cmake:583
(include)
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/modules/DuneMacros.cmake:735
(dune_process_dependency_macros)
CMakeLists.txt:22 (dune_project)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Checking for one of the modules 'psurface'
-- Checking for module 'psurface'
-- No package 'psurface' found
CMake Warning (dev) at
/usr/share/cmake-3.23/Modules/FindPackageHandleStandardArgs.cmake:438 (message):
The package name passed to `find_package_handle_standard_args` (psurface)
does not match the name of the calling package (Psurface). This can lead
to problems in calling code that expects `find_package` result variables
(e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
cmake/modules/FindPsurface.cmake:96 (find_package_handle_standard_args)
cmake/modules/DuneGridMacros.cmake:20 (find_package)
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/modules/DuneMacros.cmake:583
(include)
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/modules/DuneMacros.cmake:735
(dune_process_dependency_macros)
CMakeLists.txt:22 (dune_project)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Could NOT find psurface (missing: PSURFACE_INCLUDE_DIR PSURFACE_LIBRARY)
-- Could NOT find AmiraMesh (missing: AMIRAMESH_INCLUDE_DIR AMIRAMESH_LIBRARY)
-- Using scripts from
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/cmake/scripts for
creating doxygen stuff.
-- Adding custom target for config.h generation
-- The following OPTIONAL packages have been found:
* dune-uggrid
* MPI, Message Passing Interface library
Parallel programming on multiple processors
* PkgConfig, Unified interface for querying installed libraries
To find Dune module dependencies
* BLAS, fast linear algebra routines
* Threads, Multi-threading library
* LAPACK, fast linear algebra routines
* PythonInterp
* PythonLibs
* Alberta
-- The following REQUIRED packages have been found:
* dune-common
* dune-geometry
-- The following OPTIONAL packages have not been found:
* LATEX, Type setting system
To generate the documentation
* Sphinx, Documentation generator, <www.sphinx-doc.org>
To generate the documentation from CMake and Python sources
* Doxygen, Class documentation generator, <www.doxygen.org>
To generate the class documentation from C++ sources
* GMP, GNU multi-precision library including the C++ bindings GMPxx
Mulity-precision quadrature rules, basis function evaluation etc.
* Inkscape, converts SVG images, <www.inkscape.org>
To generate the documentation with LaTeX
* TBB, Threading Building Blocks library
Parallel programming on multi-core processors
* Vc, C++ Vectorization library, <https://github.com/VcDevel/Vc>
For use of SIMD instructions
* METIS
* ParMETIS
* Psurface
* AmiraMesh
-- Configuring done
CMake Warning (dev) in CMakeLists.txt:
Policy CMP0087 is not set: Install CODE|SCRIPT allow the use of generator
expressions. Run "cmake --help-policy CMP0087" for policy details. Use
the cmake_policy command to set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
UG_DIR
-- Build files have been written to:
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/build-cmake
--- calling make for dune-grid ---
build directory: build-cmake
cmake --build . --
[ 0%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/onedgrid/onedgrid.cc.o
[ 0%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/onedgrid/onedgridfactory.cc.o
[ 2%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/onedgrid/nulliteratorfactory.cc.o
[ 2%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/dgfparser.cc.o
[ 4%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/dgfug.cc.o
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/dune/grid/io/file/dgfparser/dgfug.cc:
In instantiation of âvoid Dune::DGFGridFactory<Dune::UGGrid<dim>
>::generate(std::istream&) [with int dim = 2; std::istream =
std::basic_istream<char>]â:
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/dune/grid/io/file/dgfparser/dgfug.cc:143:79:
required from here
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/dune/grid/io/file/dgfparser/dgfug.cc:132:11:
warning: âDune::ToUniquePtr<T>::operator Dune::ToUniquePtr<T>::pointer()
[with T = Dune::UGGrid<2>; Dune::ToUniquePtr<T>::pointer = Dune::UGGrid<2>*]â
is deprecated: "Cast to raw pointer is deprecated. Use std::unique_ptr or
std::shared_ptr instead." [-Wdeprecated-declarations]
132 | grid_ = factory_.createGrid();
In file included from
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/dune/grid/uggrid/uggridfactory.hh:17,
from
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/dune/grid/uggrid.hh:133,
from
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/dune/grid/io/file/dgfparser/dgfug.hh:19,
from
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/dune/grid/io/file/dgfparser/dgfug.cc:7:
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/dune/common/to_unique_ptr.hh:72:5:
note: declared here
72 | operator pointer() noexcept { return Super::release(); }
| ^~~~~~~~
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/dune/grid/io/file/dgfparser/dgfug.cc:
In instantiation of âvoid Dune::DGFGridFactory<Dune::UGGrid<dim>
>::generate(std::istream&) [with int dim = 3; std::istream =
std::basic_istream<char>]â:
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/dune/grid/io/file/dgfparser/dgfug.cc:144:79:
required from here
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/dune/grid/io/file/dgfparser/dgfug.cc:132:11:
warning: âDune::ToUniquePtr<T>::operator Dune::ToUniquePtr<T>::pointer()
[with T = Dune::UGGrid<3>; Dune::ToUniquePtr<T>::pointer = Dune::UGGrid<3>*]â
is deprecated: "Cast to raw pointer is deprecated. Use std::unique_ptr or
std::shared_ptr instead." [-Wdeprecated-declarations]
132 | grid_ = factory_.createGrid();
In file included from
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/dune/grid/uggrid/uggridfactory.hh:17,
from
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/dune/grid/uggrid.hh:133,
from
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/dune/grid/io/file/dgfparser/dgfug.hh:19,
from
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/dune/grid/io/file/dgfparser/dgfug.cc:7:
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-common/dune/common/to_unique_ptr.hh:72:5:
note: declared here
72 | operator pointer() noexcept { return Super::release(); }
| ^~~~~~~~
[ 4%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/basic.cc.o
[ 6%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/boundarydom.cc.o
[ 6%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/boundaryseg.cc.o
[ 9%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/cube.cc.o
[ 9%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/dim.cc.o
[ 11%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/general.cc.o
[ 11%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/gridparameter.cc.o
[ 13%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/interval.cc.o
[ 13%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/periodicfacetrans.cc.o
[ 16%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/projection.cc.o
[ 16%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/simplex.cc.o
[ 18%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/simplexgeneration.cc.o
[ 18%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/io/file/dgfparser/blocks/vertex.cc.o
[ 20%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/uggrid/uggridintersections.cc.o
[ 20%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/uggrid/uggrid.cc.o
[ 23%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/uggrid/uggridentity.cc.o
[ 23%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/uggrid/boundaryextractor.cc.o
[ 25%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/uggrid/uggridindexsets.cc.o
[ 25%] Building CXX object
lib/CMakeFiles/dunegrid.dir/__/dune/grid/uggrid/uggridfactory.cc.o
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/dune/grid/uggrid/uggridfactory.cc:
In instantiation of âDune::ToUniquePtr<Dune::UGGrid<dim> >
Dune::GridFactory<Dune::UGGrid<dim> >::createGrid() [with int dimworld = 2]â:
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/dune/grid/uggrid/uggridfactory.cc:631:16:
required from here
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/dune/grid/uggrid/uggridfactory.cc:511:18:
error: âReleaseTmpMemâ was not declared in this scope
511 | ReleaseTmpMem(grid_->multigrid_->theHeap,
grid_->multigrid_->MarkKey);
|
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/dune/grid/uggrid/uggridfactory.cc:566:16:
error: âReleaseTmpMemâ was not declared in this scope
566 | ReleaseTmpMem(grid_->multigrid_->theHeap, grid_->multigrid_->MarkKey);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/dune/grid/uggrid/uggridfactory.cc:
In instantiation of âDune::ToUniquePtr<Dune::UGGrid<dim> >
Dune::GridFactory<Dune::UGGrid<dim> >::createGrid() [with int dimworld = 3]â:
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/dune/grid/uggrid/uggridfactory.cc:632:16:
required from here
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/dune/grid/uggrid/uggridfactory.cc:511:18:
error: âReleaseTmpMemâ was not declared in this scope
511 | ReleaseTmpMem(grid_->multigrid_->theHeap,
grid_->multigrid_->MarkKey);
|
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/mnt/c/Users/kunt_ru/Documents/Porenetworkflow/dune-grid/dune/grid/uggrid/uggridfactory.cc:566:16:
error: âReleaseTmpMemâ was not declared in this scope
566 | ReleaseTmpMem(grid_->multigrid_->theHeap, grid_->multigrid_->MarkKey);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[2]: *** [lib/CMakeFiles/dunegrid.dir/build.make:398:
lib/CMakeFiles/dunegrid.dir/__/dune/grid/uggrid/uggridfactory.cc.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:3360: lib/CMakeFiles/dunegrid.dir/all] Error
2
make: *** [Makefile:166: all] Error 2
--- Failed to build dune-grid ---
Terminating dunecontrol due to previous errors!
kunt_ru@WF-030519:/mnt/c/Users/kunt_ru/Documents/Porenetworkflow$_______________________________________________
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