I encountered an error while using the Python script in the Dumux installation
instructions for installation. I am not sure what caused the installation
failure. Following the installation failure prompt, I would like to ask for
advice on how to resolve it.The attachment is the installation log. Looking
forward to your reply
| |
Junqiang Wang
|
|
[email protected]
|
************************************************************************************************************************
(1/3) Checking all prerequisites: git gcc g++ cmake pkg-config...
************************************************************************************************************************
************************************************************************************************************************
(1/3) Step completed. All prerequisites found.
************************************************************************************************************************
************************************************************************************************************************
(2/3) Cloning repositories. This may take a while. Make sure to be connected to
the internet...
************************************************************************************************************************
Skip cloning dune-common because the folder already exists.
Running git checkout releases/2.9
å·²ç»ä½äº 'releases/2.9'
æ¨çåæ¯ä¸ä¸æ¸¸åæ¯ 'origin/releases/2.9' ä¸è´ã
Skip cloning dune-geometry because the folder already exists.
Running git checkout releases/2.9
å·²ç»ä½äº 'releases/2.9'
æ¨çåæ¯ä¸ä¸æ¸¸åæ¯ 'origin/releases/2.9' ä¸è´ã
Skip cloning dune-grid because the folder already exists.
Running git checkout releases/2.9
å·²ç»ä½äº 'releases/2.9'
æ¨çåæ¯ä¸ä¸æ¸¸åæ¯ 'origin/releases/2.9' ä¸è´ã
Skip cloning dune-localfunctions because the folder already exists.
Running git checkout releases/2.9
å·²ç»ä½äº 'releases/2.9'
æ¨çåæ¯ä¸ä¸æ¸¸åæ¯ 'origin/releases/2.9' ä¸è´ã
Skip cloning dune-istl because the folder already exists.
Running git checkout releases/2.9
å·²ç»ä½äº 'releases/2.9'
æ¨çåæ¯ä¸ä¸æ¸¸åæ¯ 'origin/releases/2.9' ä¸è´ã
Skip cloning dumux because the folder already exists.
Running git checkout releases/3.8
å·²ç»ä½äº 'releases/3.8'
æ¨çåæ¯ä¸ä¸æ¸¸åæ¯ 'origin/releases/3.8' ä¸è´ã
************************************************************************************************************************
(2/3) Step completed. All repositories have been cloned into a containing
folder.
************************************************************************************************************************
************************************************************************************************************************
(3/3) Configure and build dune modules and dumux using dunecontrol. This may
take several minutes...
************************************************************************************************************************
Running ./dune-common/bin/dunecontrol --opts=dumux/cmake.opts all
----- using default flags $CMAKE_FLAGS from /home/wjq/dumux/dumux/cmake.opts
-----
WARNING: version mismatch.
dune-grid suggests 'dune-uggrid >=2.9',
but only 'dune-uggrid' = '2.8.0' is available.
Skipping 'dune-uggrid'!
WARNING: version mismatch.
dumux suggests 'dune-uggrid >=2.9',
but only 'dune-uggrid' = '2.8.0' is available.
Skipping 'dune-uggrid'!
WARNING: version mismatch.
dumux suggests 'dune-functions >=2.9',
but only 'dune-functions' = '2.8.0' is available.
Skipping 'dune-functions'!
--- going to build dune-common dune-geometry dune-grid dune-localfunctions
dune-istl dumux ---
--- calling all for dune-common ---
--- calling vcsetup for dune-common ---
--- calling cmake for dune-common ---
----- using default flags $CMAKE_FLAGS from /home/wjq/dumux/dumux/cmake.opts
-----
cmake -DCMAKE_CXX_FLAGS_RELEASE=' -fdiagnostics-color=always
-fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3
-march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs
-Wcast-align -Wno-missing-braces -Wmissing-field-initializers
-Wno-sign-compare' -DCMAKE_CXX_FLAGS_DEBUG='-O0 -g -ggdb -Wall -Wextra
-Wno-unused-parameter -Wno-sign-compare' -DCMAKE_CXX_FLAGS_RELWITHDEBINFO='
-fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow
-fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall
-Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces
-Wmissing-field-initializers -Wno-sign-compare -g -ggdb -Wall'
-DCMAKE_BUILD_TYPE=Release -DENABLE_HEADERCHECK=OFF
-DDUNE_ENABLE_PYTHONBINDINGS=ON -DBUILD_SHARED_LIBS=ON
-DCMAKE_POSITION_INDEPENDENT_CODE=ON -DCMAKE_CXX_FLAGS_RELEASE='
-fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow
-fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall
-Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces
-Wmissing-field-initializers -Wno-sign-compare' -DCMAKE_CXX_FLAGS_DEBUG='-O0 -g
-ggdb -Wall -Wextra -Wno-unused-parameter -Wno-sign-compare'
-DCMAKE_CXX_FLAGS_RELWITHDEBINFO=' -fdiagnostics-color=always
-fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3
-march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs
-Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare
-g -ggdb -Wall' -DCMAKE_BUILD_TYPE=Release -DENABLE_HEADERCHECK=OFF
-DDUNE_ENABLE_PYTHONBINDINGS=ON -DBUILD_SHARED_LIBS=ON
-DCMAKE_POSITION_INDEPENDENT_CODE=ON
-DDUNE_OPTS_FILE=/home/wjq/dumux/dumux/cmake.opts "/home/wjq/dumux/dune-common"
-- Could NOT find LATEX (missing: LATEX_COMPILER)
-- Could NOT find LatexMk (missing: LATEXMK_EXECUTABLE)
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Performing tests for dune-common (from
/home/wjq/dumux/dune-common/cmake/modules/DuneCommonMacros.cmake)
-- Set Minimal Debug Level to 4
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS:
/home/wjq/anaconda3/lib/libmkl_intel_lp64.so;/home/wjq/anaconda3/lib/libmkl_intel_thread.so;/home/wjq/anaconda3/lib/libmkl_core.so;/home/wjq/anaconda3/lib/libiomp5.so;-lm;-ldl
-- Found LAPACK:
/home/wjq/anaconda3/lib/libmkl_intel_lp64.so;/home/wjq/anaconda3/lib/libmkl_intel_thread.so;/home/wjq/anaconda3/lib/libmkl_core.so;/home/wjq/anaconda3/lib/libiomp5.so;-lm;-ldl;-lm;-ldl
-- Found GMP: /home/wjq/anaconda3/lib/libgmpxx.so
-- Found MPI_C: /home/wjq/mpich/mpich-install/lib/libmpi.so (found suitable
version "4.0", minimum required is "3.0")
-- Found MPI: TRUE (found suitable version "4.0", minimum required is "3.0")
found components: C
-- Could NOT find TBB (set TBB_DIR to path containing TBBConfig.cmake or set
PKG_CONFIG_PATH to include the location of the tbb.pc file) (missing:
PkgConfigTBB_LINK_LIBRARIES PkgConfigTBB_FOUND) (found version "")
-- Could NOT find PTScotch (missing: SCOTCH_LIBRARY SCOTCHERR_LIBRARY
SCOTCH_INCLUDE_DIR)
-- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR
METIS_API_VERSION)
-- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR
METIS_API_VERSION)
-- Found MPI_C: /home/wjq/mpich/mpich-install/lib/libmpi.so (found version
"4.0")
-- Found MPI: TRUE (found version "4.0") found components: C
-- Could NOT find ParMETIS (missing: PARMETIS_LIBRARY PARMETIS_INCLUDE_DIR
METIS_FOUND) (Required is at least version "4.0")
-- Could NOT find Vc (missing: Vc_DIR)
-- Using existing virtualenv in /home/wjq/anaconda3
-- Using scripts from /home/wjq/dumux/dune-common/cmake/scripts for creating
doxygen stuff.
-- Installing python package abstract requirements: pip>=21.a portalocker numpy
wheel setuptools>=41 jinja2 mpi4py
-- Installing python package at
/home/wjq/dumux/dune-common/build-cmake/python/. into Dune virtual environment
-- Checking if the modules used to confiugre this module match those from any
installed dune packages
-- Generating the CMake metadata file at dune/data/dune-common.cmake
-- Not adding custom target for config.h generation
-- The following OPTIONAL packages have been found:
* Sphinx, Documentation generator, <www.sphinx-doc.org>
To generate the documentation from CMake and Python sources
* BLAS, fast linear algebra routines
* LAPACK, fast linear algebra routines
* GMP, GNU multi-precision library, <https://gmplib.org>
* QuadMath, GCC Quad-Precision Math Library,
<https://gcc.gnu.org/onlinedocs/libquadmath>
* Threads, Multi-threading library
* MPI, Message Passing Interface library
Parallel programming on multiple processors
* Python3
-- The following OPTIONAL packages have not been found:
* LATEX
* LatexMk
* Doxygen, Class documentation generator, <www.doxygen.org>
To generate the class documentation from C++ sources
* Inkscape, converts SVG images, <www.inkscape.org>
To generate the documentation with LaTeX
* TBB, Intel's Threading Building Blocks,
<https://github.com/oneapi-src/oneTBB>
* PTScotch, Sequential and Parallel Graph Partitioning,
<https://gitlab.inria.fr/scotch/scotch>
* METIS, Serial Graph Partitioning,
<http://glaros.dtc.umn.edu/gkhome/metis/metis/overview>
* ParMETIS (required version >= 4.0), Parallel Graph Partitioning,
<http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview>
* Vc, C++ Vectorization library, <https://github.com/VcDevel/Vc>
For use of SIMD instructions
-- Configuring done
-- Generating done
-- Build files have been written to: /home/wjq/dumux/dune-common/build-cmake
--- calling make for dune-common ---
build directory: build-cmake
cmake --build . --
Consolidate compiler generated dependencies of target dunecommon
[ 0%] Building CXX object CMakeFiles/dunecommon.dir/dune/common/debugalign.cc.o
[ 0%] Building CXX object
CMakeFiles/dunecommon.dir/dune/common/debugallocator.cc.o
[ 0%] Building CXX object CMakeFiles/dunecommon.dir/dune/common/fmatrixev.cc.o
[ 0%] Building CXX object CMakeFiles/dunecommon.dir/dune/common/ios_state.cc.o
[ 0%] Building CXX object
CMakeFiles/dunecommon.dir/dune/common/parametertree.cc.o
[ 25%] Building CXX object
CMakeFiles/dunecommon.dir/dune/common/parametertreeparser.cc.o
[ 25%] Building CXX object CMakeFiles/dunecommon.dir/dune/common/path.cc.o
[ 25%] Building CXX object CMakeFiles/dunecommon.dir/dune/common/simd/test.cc.o
[ 50%] Building CXX object CMakeFiles/dunecommon.dir/dune/common/stdstreams.cc.o
[ 50%] Building CXX object CMakeFiles/dunecommon.dir/dune/common/stdthread.cc.o
[ 50%] Linking CXX shared library lib/libdunecommon.so
[ 75%] Built target dunecommon
Consolidate compiler generated dependencies of target _common
[ 75%] Building CXX object
python/dune/common/CMakeFiles/_common.dir/_common.cc.o
[ 75%] Linking CXX shared library _common.so
[ 75%] Built target _common
Consolidate compiler generated dependencies of target _typeregistry
[ 75%] Building CXX object
python/dune/typeregistry/CMakeFiles/_typeregistry.dir/_typeregistry.cc.o
[100%] Linking CXX shared library _typeregistry.so
[100%] Built target _typeregistry
--- dune-common done ---
--- calling all for dune-geometry ---
--- calling vcsetup for dune-geometry ---
--- calling cmake for dune-geometry ---
----- using default flags $CMAKE_FLAGS from /home/wjq/dumux/dumux/cmake.opts
-----
cmake -DCMAKE_CXX_FLAGS_RELEASE=' -fdiagnostics-color=always
-fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3
-march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs
-Wcast-align -Wno-missing-braces -Wmissing-field-initializers
-Wno-sign-compare' -DCMAKE_CXX_FLAGS_DEBUG='-O0 -g -ggdb -Wall -Wextra
-Wno-unused-parameter -Wno-sign-compare' -DCMAKE_CXX_FLAGS_RELWITHDEBINFO='
-fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow
-fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall
-Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces
-Wmissing-field-initializers -Wno-sign-compare -g -ggdb -Wall'
-DCMAKE_BUILD_TYPE=Release -DENABLE_HEADERCHECK=OFF
-DDUNE_ENABLE_PYTHONBINDINGS=ON -DBUILD_SHARED_LIBS=ON
-DCMAKE_POSITION_INDEPENDENT_CODE=ON
"-Ddune-common_DIR=/home/wjq/dumux/dune-common/build-cmake"
-DCMAKE_CXX_FLAGS_RELEASE=' -fdiagnostics-color=always -fno-strict-aliasing
-fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native
-funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align
-Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare'
-DCMAKE_CXX_FLAGS_DEBUG='-O0 -g -ggdb -Wall -Wextra -Wno-unused-parameter
-Wno-sign-compare' -DCMAKE_CXX_FLAGS_RELWITHDEBINFO='
-fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow
-fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall
-Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces
-Wmissing-field-initializers -Wno-sign-compare -g -ggdb -Wall'
-DCMAKE_BUILD_TYPE=Release -DENABLE_HEADERCHECK=OFF
-DDUNE_ENABLE_PYTHONBINDINGS=ON -DBUILD_SHARED_LIBS=ON
-DCMAKE_POSITION_INDEPENDENT_CODE=ON
-DDUNE_OPTS_FILE=/home/wjq/dumux/dumux/cmake.opts
"/home/wjq/dumux/dune-geometry"
-- Dependencies for dune-geometry: dune-common (>= 2.9)
-- Could NOT find LATEX (missing: LATEX_COMPILER)
-- Could NOT find LatexMk (missing: LATEXMK_EXECUTABLE)
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Performing tests for dune-common (from
/home/wjq/dumux/dune-common/cmake/modules/DuneCommonMacros.cmake)
-- Set Minimal Debug Level to 4
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS:
/home/wjq/anaconda3/lib/libmkl_intel_lp64.so;/home/wjq/anaconda3/lib/libmkl_intel_thread.so;/home/wjq/anaconda3/lib/libmkl_core.so;/home/wjq/anaconda3/lib/libiomp5.so;-lm;-ldl
-- Found LAPACK:
/home/wjq/anaconda3/lib/libmkl_intel_lp64.so;/home/wjq/anaconda3/lib/libmkl_intel_thread.so;/home/wjq/anaconda3/lib/libmkl_core.so;/home/wjq/anaconda3/lib/libiomp5.so;-lm;-ldl;-lm;-ldl
-- Found GMP: /home/wjq/anaconda3/lib/libgmpxx.so
-- Found MPI_C: /home/wjq/mpich/mpich-install/lib/libmpi.so (found suitable
version "4.0", minimum required is "3.0")
-- Found MPI: TRUE (found suitable version "4.0", minimum required is "3.0")
found components: C
-- Could NOT find TBB (set TBB_DIR to path containing TBBConfig.cmake or set
PKG_CONFIG_PATH to include the location of the tbb.pc file) (missing:
PkgConfigTBB_LINK_LIBRARIES PkgConfigTBB_FOUND) (found version "")
-- Could NOT find PTScotch (missing: SCOTCH_LIBRARY SCOTCHERR_LIBRARY
SCOTCH_INCLUDE_DIR)
-- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR
METIS_API_VERSION)
-- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR
METIS_API_VERSION)
-- Found MPI_C: /home/wjq/mpich/mpich-install/lib/libmpi.so (found version
"4.0")
-- Found MPI: TRUE (found version "4.0") found components: C
-- Could NOT find ParMETIS (missing: PARMETIS_LIBRARY PARMETIS_INCLUDE_DIR
METIS_FOUND) (Required is at least version "4.0")
-- Could NOT find Vc (missing: Vc_DIR)
-- Using existing virtualenv in /home/wjq/anaconda3
-- Setting dune-common_INCLUDE_DIRS=/home/wjq/dumux/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Inkscape not found so no images will be converted
-- Using scripts from /home/wjq/dumux/dune-common/cmake/scripts for creating
doxygen stuff.
-- Installing python package abstract requirements: dune-common
-- Installing python package at
/home/wjq/dumux/dune-geometry/build-cmake/python/. into Dune virtual
environment
-- Checking if the modules used to confiugre this module match those from any
installed dune packages
-- Generating the CMake metadata file at dune/data/dune-geometry.cmake
-- Adding custom target for config.h generation
-- The following OPTIONAL packages have been found:
* Sphinx, Documentation generator, <www.sphinx-doc.org>
To generate the documentation from CMake and Python sources
* BLAS, fast linear algebra routines
* LAPACK, fast linear algebra routines
* GMP, GNU multi-precision library, <https://gmplib.org>
* QuadMath, GCC Quad-Precision Math Library,
<https://gcc.gnu.org/onlinedocs/libquadmath>
* Threads, Multi-threading library
* MPI, Message Passing Interface library
Parallel programming on multiple processors
* Python3
-- The following REQUIRED packages have been found:
* dune-common
-- The following OPTIONAL packages have not been found:
* LATEX
* LatexMk
* Doxygen, Class documentation generator, <www.doxygen.org>
To generate the class documentation from C++ sources
* Inkscape, converts SVG images, <www.inkscape.org>
To generate the documentation with LaTeX
* TBB, Intel's Threading Building Blocks,
<https://github.com/oneapi-src/oneTBB>
* PTScotch, Sequential and Parallel Graph Partitioning,
<https://gitlab.inria.fr/scotch/scotch>
* METIS, Serial Graph Partitioning,
<http://glaros.dtc.umn.edu/gkhome/metis/metis/overview>
* ParMETIS (required version >= 4.0), Parallel Graph Partitioning,
<http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview>
* Vc, C++ Vectorization library, <https://github.com/VcDevel/Vc>
For use of SIMD instructions
-- Configuring done
-- Generating done
-- Build files have been written to: /home/wjq/dumux/dune-geometry/build-cmake
--- calling make for dune-geometry ---
build directory: build-cmake
cmake --build . --
Consolidate compiler generated dependencies of target dunegeometry
[ 20%] Building CXX object
CMakeFiles/dunegeometry.dir/dune/geometry/quadraturerules/quadraturerules.cc.o
[ 40%] Building CXX object
CMakeFiles/dunegeometry.dir/dune/geometry/referenceelementimplementation.cc.o
[ 60%] Linking CXX shared library lib/libdunegeometry.so
[ 60%] Built target dunegeometry
Consolidate compiler generated dependencies of target _geometry
[ 80%] Building CXX object
python/dune/geometry/CMakeFiles/_geometry.dir/_geometry.cc.o
[100%] Linking CXX shared library _geometry.so
[100%] Built target _geometry
--- dune-geometry done ---
--- calling all for dune-grid ---
--- calling vcsetup for dune-grid ---
--- calling cmake for dune-grid ---
----- using default flags $CMAKE_FLAGS from /home/wjq/dumux/dumux/cmake.opts
-----
WARNING: version mismatch.
dune-grid suggests 'dune-uggrid >=2.9',
but only 'dune-uggrid' = '2.8.0' is available.
Skipping 'dune-uggrid'!
cmake -DCMAKE_CXX_FLAGS_RELEASE=' -fdiagnostics-color=always
-fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3
-march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs
-Wcast-align -Wno-missing-braces -Wmissing-field-initializers
-Wno-sign-compare' -DCMAKE_CXX_FLAGS_DEBUG='-O0 -g -ggdb -Wall -Wextra
-Wno-unused-parameter -Wno-sign-compare' -DCMAKE_CXX_FLAGS_RELWITHDEBINFO='
-fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow
-fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall
-Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces
-Wmissing-field-initializers -Wno-sign-compare -g -ggdb -Wall'
-DCMAKE_BUILD_TYPE=Release -DENABLE_HEADERCHECK=OFF
-DDUNE_ENABLE_PYTHONBINDINGS=ON -DBUILD_SHARED_LIBS=ON
-DCMAKE_POSITION_INDEPENDENT_CODE=ON
"-Ddune-common_DIR=/home/wjq/dumux/dune-common/build-cmake"
"-Ddune-geometry_DIR=/home/wjq/dumux/dune-geometry/build-cmake"
-DCMAKE_CXX_FLAGS_RELEASE=' -fdiagnostics-color=always -fno-strict-aliasing
-fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native
-funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align
-Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare'
-DCMAKE_CXX_FLAGS_DEBUG='-O0 -g -ggdb -Wall -Wextra -Wno-unused-parameter
-Wno-sign-compare' -DCMAKE_CXX_FLAGS_RELWITHDEBINFO='
-fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow
-fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall
-Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces
-Wmissing-field-initializers -Wno-sign-compare -g -ggdb -Wall'
-DCMAKE_BUILD_TYPE=Release -DENABLE_HEADERCHECK=OFF
-DDUNE_ENABLE_PYTHONBINDINGS=ON -DBUILD_SHARED_LIBS=ON
-DCMAKE_POSITION_INDEPENDENT_CODE=ON
-DDUNE_OPTS_FILE=/home/wjq/dumux/dumux/cmake.opts "/home/wjq/dumux/dune-grid"
-- Dependencies for dune-grid: dune-geometry (>= 2.9)
-- Suggestions for dune-grid: dune-uggrid (>=2.9)
-- Dependencies for dune-geometry: dune-common (>= 2.9)
-- Dependencies for dune-uggrid: dune-common (>= 2.8)
CMake Warning at
/home/wjq/dumux/dune-common/cmake/modules/DuneModuleDependencies.cmake:257
(message):
Could not find requested version of module dune-uggrid. Requested version
was >=2.9, found version is 2.8.0
Call Stack (most recent call first):
/home/wjq/dumux/dune-common/cmake/modules/DuneModuleDependencies.cmake:289
(find_dune_package)
/home/wjq/dumux/dune-common/cmake/modules/DuneModuleDependencies.cmake:340
(dune_process_dependency_leafs)
/home/wjq/dumux/dune-common/cmake/modules/DuneModuleDependencies.cmake:46
(dune_create_dependency_leafs)
/home/wjq/dumux/dune-common/cmake/modules/DuneProject.cmake:90
(dune_create_dependency_tree)
CMakeLists.txt:22 (dune_project)
-- Could NOT find LATEX (missing: LATEX_COMPILER)
-- Could NOT find LatexMk (missing: LATEXMK_EXECUTABLE)
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Performing tests for dune-common (from
/usr/share/dune/cmake/modules/DuneCommonMacros.cmake)
-- Set Minimal Debug Level to 4
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS:
/home/wjq/anaconda3/lib/libmkl_intel_lp64.so;/home/wjq/anaconda3/lib/libmkl_intel_thread.so;/home/wjq/anaconda3/lib/libmkl_core.so;/home/wjq/anaconda3/lib/libiomp5.so;-lm;-ldl
-- Found LAPACK:
/home/wjq/anaconda3/lib/libmkl_intel_lp64.so;/home/wjq/anaconda3/lib/libmkl_intel_thread.so;/home/wjq/anaconda3/lib/libmkl_core.so;/home/wjq/anaconda3/lib/libiomp5.so;-lm;-ldl;-lm;-ldl
-- Found GMP: /home/wjq/anaconda3/lib/libgmpxx.so
-- Found MPI_C: /home/wjq/mpich/mpich-install/lib/libmpi.so (found suitable
version "4.0", minimum required is "3.0")
-- Found MPI: TRUE (found suitable version "4.0", minimum required is "3.0")
found components: C
-- Could NOT find TBB (set TBB_DIR to path containing TBBConfig.cmake or set
PKG_CONFIG_PATH to include the location of the tbb.pc file) (missing:
PkgConfigTBB_LINK_LIBRARIES PkgConfigTBB_FOUND) (found version "")
-- Could NOT find PTScotch (missing: SCOTCH_LIBRARY SCOTCHERR_LIBRARY
SCOTCH_INCLUDE_DIR)
-- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR
METIS_API_VERSION)
-- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR
METIS_API_VERSION)
-- Found MPI_C: /home/wjq/mpich/mpich-install/lib/libmpi.so (found version
"4.0")
-- Found MPI: TRUE (found version "4.0") found components: C
-- Could NOT find ParMETIS (missing: PARMETIS_LIBRARY PARMETIS_INCLUDE_DIR
METIS_FOUND) (Required is at least version "4.0")
-- Could NOT find Vc (missing: Vc_DIR)
-- Setting dune-common_INCLUDE_DIRS=/home/wjq/dumux/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Performing tests for dune-uggrid (from
/usr/share/dune/cmake/modules/DuneUggridMacros.cmake)
-- Setting dune-uggrid_INCLUDE_DIRS=/usr/include
-- Setting dune-uggrid_LIBRARIES=duneuggrid
-- Setting dune-geometry_INCLUDE_DIRS=/home/wjq/dumux/dune-geometry
-- Setting dune-geometry_LIBRARIES=dunegeometry
-- Performing tests for dune-grid (from
/home/wjq/dumux/dune-grid/cmake/modules/DuneGridMacros.cmake)
-- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR
METIS_API_VERSION)
-- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR
METIS_API_VERSION)
-- Could NOT find ParMETIS (missing: PARMETIS_LIBRARY PARMETIS_INCLUDE_DIR
METIS_FOUND)
-- Using scripts from /home/wjq/dumux/dune-common/cmake/scripts for creating
doxygen stuff.
CMake Error at python/CMakeLists.txt:6 (dune_python_configure_bindings):
Unknown CMake command "dune_python_configure_bindings".
-- Configuring incomplete, errors occurred!
See also "/home/wjq/dumux/dune-grid/build-cmake/CMakeFiles/CMakeOutput.log".
See also "/home/wjq/dumux/dune-grid/build-cmake/CMakeFiles/CMakeError.log".
--- Failed to build dune-grid ---
Terminating dunecontrol due to previous errors!
The command ./dune-common/bin/dunecontrol --opts=dumux/cmake.opts all returned
with non-zero exit code.
You find the error message in the file 'installdumux.log'.
If you can't fix the problem yourself consider reporting your issue
on the mailing list ([email protected]) and
attach the file 'installdumux.log'.
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